View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_16 (Length: 457)
Name: NF17034_low_16
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 31465055 - 31464626
Alignment:
| Q |
18 |
aggaatccttgcgcggagagaatgaagcaaaaacaagaactacaaaggatataggaatgcgtggagagagagcatcttaaagatcaggaatgtgccaaga |
117 |
Q |
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| T |
31465055 |
aggaatccttgcgcggagagaatgaagcaaaaacaagaactacaaaagatataggaatgcgtggagagagagcatcttaaagatcaggaatgtgccaaga |
31464956 |
T |
|
| Q |
118 |
tagagaatacatt--atgttaaccatattacaaatatttcactgtctgttttagccgatgcatgtttatagaatcctaggagcatgtttggattagcttt |
215 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464955 |
tagagaatacatttcatgttaaccatattacaaatatttcactgtctgttttagccgatgcatgtttatagaatcctaggagcatgtttggattagcttt |
31464856 |
T |
|
| Q |
216 |
gtcttcttcagaatcacaatgttccaatttgcaaacctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
31464855 |
gtcttcttcagaatcacaatgttccaatttgcaaacctacactttagaacttcaacaaaatcaccgtgtcaccgtgatttcatcaaactcatagtgattt |
31464756 |
T |
|
| Q |
316 |
taaatctgcatttggactatataaactcattctcatcctcctttcctctgagaactggagggtttacac---nnnnnnntatctcccaacaattaaacct |
412 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |
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| T |
31464755 |
taaatctgcatctggactatataaactcattctcatcctcctttcctctgagaactggagggttaacacaaaaaaaaaatatctcccaataattaaacct |
31464656 |
T |
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| Q |
413 |
tccttgttaaatcagcatggataacataac |
442 |
Q |
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| T |
31464655 |
tccttgttaaatcagcatggataacataac |
31464626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 14570564 - 14570513
Alignment:
| Q |
252 |
ctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaac |
303 |
Q |
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| T |
14570564 |
ctacaatttagaactttaacaaaatcaacgtgtcaccgtgatttcatcaaac |
14570513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 81 - 350
Target Start/End: Original strand, 39279540 - 39279823
Alignment:
| Q |
81 |
gagagagagcatcttaaagatcaggaatgtgccaagatagagaatacatt--atgttaaccatat-----tacaaatatttcactgtctgttttagccga |
173 |
Q |
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| T |
39279540 |
gagagagagcgtcttaaagatcaggtatgtgccacgatagagaatacatttcatgttaactatataatattacaaatatttcatggtctgtcttagccaa |
39279639 |
T |
|
| Q |
174 |
tgcatgtttatagaatcctaggagcatgtttggattagctttgtcttcttcagaatcacaatgttcca-----attt--gcaaacctacactttagaact |
266 |
Q |
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||| | ||||| | | |||||||||| ||| |||||||| | || ||| ||||| || | | ||| |||| ||||| ||||||||||||||| |
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| T |
39279640 |
tgccttcttataaacttctaggagcatttttttattagcttcatgtttttcggaatcccagtctgccattatgattttggcaaaactacactttagaact |
39279739 |
T |
|
| Q |
267 |
tcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattttaaatctgcatttggactatataaactcattctca |
350 |
Q |
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|||||||||||||| ||||||||||||||| ||||| |||| |||||| |||| |||| | |||||||||||| ||||||||| |
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| T |
39279740 |
tcaacaaaatcaccgtgtcaccgtgatttcgtcaaaatcaccgtgattccaaatatgcactaggactatataaattcattctca |
39279823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 8091311 - 8091258
Alignment:
| Q |
262 |
gaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcacagtgattt |
315 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| |
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| T |
8091311 |
gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaattcaatgtgattt |
8091258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 8091180 - 8091140
Alignment:
| Q |
262 |
gaacttcaacaaaatcaccttgtcaccgtgatttcatcaaa |
302 |
Q |
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| T |
8091180 |
gaacttcaacaaaatcacagtgtcaccgtgatttcttcaaa |
8091140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 25116571 - 25116531
Alignment:
| Q |
266 |
ttcaacaaaatcaccttgtcaccgtgatttcatcaaactca |
306 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| |
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| T |
25116571 |
ttcaacaaaatcacgttgtcagtgtgatttcatcaaactca |
25116531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 34583745 - 34583692
Alignment:
| Q |
253 |
tacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactca |
306 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||| |
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|
| T |
34583745 |
tacactttagaacttcaacgaaatcacgatgtcaccgtaattacatcaaactca |
34583692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 10478316 - 10478366
Alignment:
| Q |
256 |
actttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactca |
306 |
Q |
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||||| |||||||||||||||||| || ||||||||||| |||||||||| |
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| T |
10478316 |
actttggaacttcaacaaaatcacggtggcaccgtgattttatcaaactca |
10478366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 18898657 - 18898608
Alignment:
| Q |
258 |
tttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcac |
307 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
18898657 |
tttagagcttcaacaaaatcaaggtgtcaccgtgatttcatcaagctcac |
18898608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 6019622 - 6019567
Alignment:
| Q |
252 |
ctacactttagaacttcaacaaaatcaccttgtcaccgtgatttcatcaaactcac |
307 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||| |||||| || ||||||| |
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|
| T |
6019622 |
ctacactttataacttcaacaaaatcacgttgtcaccacgatttcgtccaactcac |
6019567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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