View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_17 (Length: 452)
Name: NF17034_low_17
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 56402607 - 56402156
Alignment:
| Q |
1 |
ccaattgaagaaatccaccaaagggtgtcattaccatgcgagttgaatgcacaagtctggcatatcatgatnnnnnnnngggcactgtaaaagttttcaa |
100 |
Q |
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| T |
56402607 |
ccaattgaagaaatccaccaaagggcgtcattaccatgcgagttgaatgcacaagtctggcatatcatgataaaaaaaagggcactgtaaaagttttcaa |
56402508 |
T |
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| Q |
101 |
ttttgtgctaaaatcatctagcccttagtatcattaacaaatcacgctatctaaaatacataaagcatacgcatggacctgctaaagaaactgaatctat |
200 |
Q |
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| T |
56402507 |
tttcgtgctaaaatcatctagcccttggtatcattaacaaatcacgctatctaaaatacataaagcatacgcatggacctgctaaagaaactgaatctat |
56402408 |
T |
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| Q |
201 |
ctagatcttcacaattaaaacatgatgtagaggagaataataacttaatggaaacccatagtggttgccgtgtttgctagaacagattccatattcttaa |
300 |
Q |
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| T |
56402407 |
ctagatcttcacaattaaaacatgatgtagaggagaataataacttaatggaaacccatagtggttgccgtgtttgctagaacagattccatattcttaa |
56402308 |
T |
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| Q |
301 |
aaatcagtagtggatccatgaatgcggaacaacaacttttgcataattgcatctgattcaatgaccactttttctgagttgagctccctttgccaaatgt |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56402307 |
aaatcagtagtggatccatgaatgcagaacaacaacttttgcataattgcatctgattcaatgaccactttttctgagttgagctccctttgccaaatgt |
56402208 |
T |
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| Q |
401 |
gaatcacaccaaaaggccaagttgttccacaatcaatacctttggatctaag |
452 |
Q |
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| T |
56402207 |
gaatcacaccaaaaggccaagttgttccacaatcaatacctttggatctaag |
56402156 |
T |
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