View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_18 (Length: 439)
Name: NF17034_low_18
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Complemental strand, 37216892 - 37216486
Alignment:
| Q |
14 |
attattctctgttctctattctctcacttttaatgcaaatttgttctttgttatcactttgtttcatgtttccgaagaattgtaaaagagtgaataggca |
113 |
Q |
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| T |
37216892 |
attattctctgttctctattctctcacttttaatgcaaatttgttctttgttatcactttgtttcatgtttccgaagaattgtaaaagagtgaataggca |
37216793 |
T |
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| Q |
114 |
aattagtcctcaatttgaaattgtaagcatcatttaaaacagtctctcattttttgcgacttaaaaaatacatccctggaattgttaacttttgtcatta |
213 |
Q |
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| T |
37216792 |
aattagtcctcaatttgaaattgtaagcatcatttaaaacagtctctcattttttgcgacttaaaaaatacatccctggaattgttaacttttgtcatta |
37216693 |
T |
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| Q |
214 |
gagactatgatatgacacattaattgaacatgtgacattgcatattgatcctacatcaatgtcaattcatcattagggactaatttgcatatgatattta |
313 |
Q |
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| T |
37216692 |
gagactatgatatgacacattaattgaacatgtgacattgcatattgatcctacatcaatgtcaattcatcattagggactaatttgcatatgatattta |
37216593 |
T |
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| Q |
314 |
ggttatcttaggaacaaatttgtcggtacttaaaattgtgtagcgactcgattactcgacaaattagtccctatatgacataatagtctttggtctggtg |
413 |
Q |
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| T |
37216592 |
ggttatcttaggaacaaatttgtcggtaattaaaattgtgtagcgactcgattactcgacaaattagtccctatatgtcataatagtctttggtctggtg |
37216493 |
T |
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| Q |
414 |
acattaa |
420 |
Q |
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| T |
37216492 |
acattaa |
37216486 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 4569631 - 4569688
Alignment:
| Q |
195 |
ttgttaacttttgtcattagagactatgatatgacacattaattgaacatgtgacatt |
252 |
Q |
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| T |
4569631 |
ttgttaacttatgtcgttggagactatgatatgacatgttaaatgaacatgtgtcatt |
4569688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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