View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_2 (Length: 854)
Name: NF17034_low_2
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 78 - 835
Target Start/End: Original strand, 11173314 - 11174061
Alignment:
| Q |
78 |
tagaaattttcgtatactatcttttattaaatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
177 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173314 |
tagaaattttcgtatactatcttttattatatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
11173413 |
T |
|
| Q |
178 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagagttgctgaaggaaatttcattcattgaagaaga |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
11173414 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagaattgctgaaggaaatttcattcatagaagaaga |
11173513 |
T |
|
| Q |
278 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173514 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
11173613 |
T |
|
| Q |
378 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgctgttcaaaggaaacaatctaataattagatattaaga |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
11173614 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgcttttcaaaggaaacaatgtaataattagatattaaga |
11173713 |
T |
|
| Q |
478 |
gtcttgaaatcatatatgaatgttataaattaaagtttacctcatcctcagatggtagagcagtgctaagagcttggctattgaaactccggacattata |
577 |
Q |
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| T |
11173714 |
gtcttgaaatcatatatgaatgttaaaaattaaagtttacctcatcctcagatggtagagcagtgctaagagcttggctattgaaactccggacattata |
11173813 |
T |
|
| Q |
578 |
aagctccctgagtctgtcaaaattctcaccccaccagactctagcttgccacttatcaaagatttctcgacttcacatttaaatattaagcaataagtat |
677 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
11173814 |
aagctccctgagtctgtcaaaattctcaccccaccatactctagcttgccacttatcaaagatttcgcgacttcacatttaaatgttaagcaataagtat |
11173913 |
T |
|
| Q |
678 |
tgttacaactaaattatgagacgtaaactaaacctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacaca |
777 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173914 |
tgttacaactaaattatgagacgtaaactaaacctacgtagcactgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacaca |
11174013 |
T |
|
| Q |
778 |
tatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagt |
835 |
Q |
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||| ||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
11174014 |
tat----------agttacagcaatttatcaaatcattacgagtgtcaacgtgtcagt |
11174061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 709 - 784
Target Start/End: Original strand, 6213790 - 6213865
Alignment:
| Q |
709 |
acctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatatggtt |
784 |
Q |
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||||| ||||| ||||||||||| ||||||| | |||||| | ||||| ||||| ||||||||||||||||||||| |
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| T |
6213790 |
acctatgtagctccgacacttcacattgaaggcttgtttgttgtctgacaccaacacgacactgacacatatggtt |
6213865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 746
Target Start/End: Original strand, 4628293 - 4628324
Alignment:
| Q |
715 |
gtagcaccgacacttcaaattgaagacgtgtt |
746 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4628293 |
gtagcaccgacacttcaaattgaagacgtgtt |
4628324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 711 - 746
Target Start/End: Complemental strand, 10794645 - 10794610
Alignment:
| Q |
711 |
ctacgtagcaccgacacttcaaattgaagacgtgtt |
746 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
10794645 |
ctacgtagcaccgacacttcatattgaagacgtgtt |
10794610 |
T |
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