View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_low_21 (Length: 419)

Name: NF17034_low_21
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_low_21
NF17034_low_21
[»] chr1 (11 HSPs)
chr1 (1-363)||(24621417-24621765)
chr1 (27-363)||(23787102-23787432)
chr1 (6-243)||(47569320-47569556)
chr1 (161-247)||(28231689-28231775)
chr1 (159-247)||(28239382-28239470)
chr1 (362-401)||(23787032-23787071)
chr1 (362-401)||(24621796-24621835)
chr1 (149-244)||(28326517-28326612)
chr1 (359-398)||(4251615-4251654)
chr1 (158-232)||(6326538-6326612)
chr1 (362-398)||(28239064-28239100)
[»] chr2 (2 HSPs)
chr2 (100-232)||(16375392-16375524)
chr2 (7-43)||(16375577-16375613)
[»] chr5 (1 HSPs)
chr5 (158-232)||(2657518-2657592)
[»] chr8 (1 HSPs)
chr8 (160-217)||(27823893-27823949)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 24621417 - 24621765
Alignment:
Q  1 actgtccactttaaatagtttgttgttgttcaatcatatttatgtatagtaaggatcgggataatgttttgcactctcgaacattttcacctgttctgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  24621417 actgtccactttaaatagtttgttgttgttcaatcatatttatgtatagtaaggatcgggataatgttttgcatcctcgaaaattttcacctgttctgca 24621516  T
Q  101 atcttattcataacaaaccgtcttgatctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatca 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24621517 atcttattcataacaaaccgttttgatctccgtttgtatagttgacacataacagattgataacaagcaacattaggtttgacaccagcttttatcatca 24621616  T
Q  201 aagttgctgcacttttaacagatttcacctcttgttcggtaactaaaatttgataaattcttgattgctccaattctttaagcaattcaatagctagttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        |||  ||||||||||||||||||||||||||||||    
T  24621617 aagttgctgcacttttaacagatttcacctcttgttcggtaactaaagtttgataaa------ggtgcaacaattctttaagcaattcaatagctagttt 24621710  T
Q  301 aaagcggccgatgatgcaataaccatagattagatttgcatatgttctagggttaagcaagat 363  Q
    |||| | ||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  24621711 aaagtgaccgatg--------accatagattagatttgcatatgttctagggttaagcaagat 24621765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 27 - 363
Target Start/End: Complemental strand, 23787432 - 23787102
Alignment:
Q  27 tgttcaatcatatttatgtatagtaaggatcgggataatgttttgcactctcgaacattttcacctgttctgcaatcttattcataacaaaccgtcttga 126  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23787432 tgttcaatcatatttatgtatagtaaggatcgagataatgttttgcattctcgaaaattttcacttgttctgcaatcttattcataacaaaccgtcttga 23787333  T
Q  127 tctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttc 226  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23787332 tctccgtttgtatagttgacacataacaggttgataacaagcaacattaggtttgacaccagcttttatcaccaaagttgctgcacttttaacagatttc 23787233  T
Q  227 acctcttgttcggtaactaaaatttgataaattcttgattgctccaattctttaagcaattcaatagctagtttaaagcggccgatgatgcaataaccat 326  Q
    ||||||||||||||||||||| |||||||||        |||  |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  23787232 acctcttgttcggtaactaaagtttgataaa------ggtgcaacaattctttaagcaattcaacagctagtttaaagtgaccgatgatgcaataaccat 23787139  T
Q  327 agattagatttgcatatgttctagggttaagcaagat 363  Q
    |||||||||||||||||||| ||||||||||||||||    
T  23787138 agattagatttgcatatgttatagggttaagcaagat 23787102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 47569556 - 47569320
Alignment:
Q  6 ccactttaaatagtttgttgttgttcaatcatatttatgtatagtaaggatcgggataatgttttgcactctcgaacattttcacctgttctgcaatctt 105  Q
    |||||||||||||||||||||||||||||||||||||| |||   ||| ||    | ||||||| ||||     ||| ||| ||||  || |||||| ||    
T  47569556 ccactttaaatagtttgttgttgttcaatcatatttatttatttcaag-attaaaaaaatgtttagcacgtagcaacttttccaccctttgtgcaatgtt 47569458  T
Q  106 attcataacaaaccgtcttgatctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatcaaagtt 205  Q
    |||||||||||  | ||||| || |  || |||||||  ||  |||||||| ||||||| |||| | ||||||||||||| | |||||||||||||||      
T  47569457 attcataacaacacttcttgctccctcttcgtatagtctaccaataacagagtgataactagcagcattaggtttgacactaccttttatcatcaaagca 47569358  T
Q  206 gctgcacttttaacagatttcacctcttgttcggtaac 243  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  47569357 gctgcacatttagcagatttcacctcttgttcggtaac 47569320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 28231775 - 28231689
Alignment:
Q  161 taacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaa 247  Q
    |||| |||||||||||||||||||||| |||||||||||| || |||| |||||||| ||||| ||||||||  |||||||||||||    
T  28231775 taactagcaacgttaggtttgacaccaccttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaa 28231689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 28239470 - 28239382
Alignment:
Q  159 gataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaa 247  Q
    ||||||||||||| ||||||||||||||| |||||||||||| || |||  ||||| || |||||||||| ||| ||||||||||||||    
T  28239470 gataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaa 28239382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 23787071 - 23787032
Alignment:
Q  362 ataggcttggtttacaagtctttctttggagagcctgaat 401  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23787071 ataggcttggtttacaagtctttctttggagagcctgaat 23787032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 401
Target Start/End: Original strand, 24621796 - 24621835
Alignment:
Q  362 ataggcttggtttacaagtctttctttggagagcctgaat 401  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24621796 ataggcttggtttacaagtctttctttggagagcctgaat 24621835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 28326612 - 28326517
Alignment:
Q  149 ataacagattgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaact 244  Q
    ||||| || ||||||| |||||| |||||| ||| |||| |||||||||| | || | || |||||||| ||||||||||||||  ||||||||||    
T  28326612 ataaccgagtgataactagcaacattaggtctgagaccaccttttatcatgacagctactacacttttagcagatttcacctctctttcggtaact 28326517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 4251615 - 4251654
Alignment:
Q  359 aagataggcttggtttacaagtctttctttggagagcctg 398  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  4251615 aagataggcttggtttacaagtctatctttgcagagcctg 4251654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 6326538 - 6326612
Alignment:
Q  158 tgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctct 232  Q
    ||||||| |||||| |||||||||| |||  |||||||||||| || | ||||| ||||| ||||||| ||||||    
T  6326538 tgataactagcaacattaggtttgagaccgccttttatcatcacagctactgcagttttagcagatttgacctct 6326612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 28239100 - 28239064
Alignment:
Q  362 ataggcttggtttacaagtctttctttggagagcctg 398  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  28239100 ataggcttggtttacaagtctatctttgcagagcctg 28239064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 16375524 - 16375392
Alignment:
Q  100 aatcttattcataacaaaccgtcttgatctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatc 199  Q
    ||||||| |||||||||  | |||||||| || ||||||||||  |   |||| ||| ||||||| || | | ||||||||||||||| |||||||||||    
T  16375524 aatcttaatcataacaacacttcttgatccccctttgtatagtctatcgataatagagtgataactagaagcattaggtttgacaccaccttttatcatc 16375425  T
Q  200 aaagttgctgcacttttaacagatttcacctct 232  Q
    | |  |||||||||||||  |||||| ||||||    
T  16375424 acatgtgctgcacttttattagattttacctct 16375392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 16375613 - 16375577
Alignment:
Q  7 cactttaaatagtttgttgttgttcaatcatatttat 43  Q
    ||||||||||||||| || ||||||||||||||||||    
T  16375613 cactttaaatagttttttattgttcaatcatatttat 16375577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 2657518 - 2657592
Alignment:
Q  158 tgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctct 232  Q
    ||||||| |||| | ||||||||||||  | || ||||||||| ||||||||| ||||||  |||||||||||||    
T  2657518 tgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct 2657592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 27823949 - 27823893
Alignment:
Q  160 ataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcactttta 217  Q
    ||||| |||||| ||||||||||||||| ||||||| |||| | ||||||||||||||    
T  27823949 ataactagcaacattaggtttgacacca-cttttatgatcacaattgctgcactttta 27823893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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