View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_low_22 (Length: 412)

Name: NF17034_low_22
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_low_22
NF17034_low_22
[»] chr6 (1 HSPs)
chr6 (1-394)||(9411657-9412050)
[»] chr1 (3 HSPs)
chr1 (14-250)||(7554868-7555108)
chr1 (290-335)||(7554786-7554831)
chr1 (28-161)||(9587021-9587154)
[»] chr5 (4 HSPs)
chr5 (55-166)||(28673460-28673571)
chr5 (45-166)||(28695700-28695821)
chr5 (47-142)||(41886774-41886869)
chr5 (46-166)||(29021555-29021675)
[»] chr4 (6 HSPs)
chr4 (52-259)||(8186543-8186750)
chr4 (48-162)||(532582-532696)
chr4 (46-117)||(1481561-1481632)
chr4 (187-263)||(1548016-1548092)
chr4 (206-248)||(1601179-1601221)
chr4 (80-169)||(1755308-1755397)
[»] chr8 (1 HSPs)
chr8 (63-241)||(18314832-18315010)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 9412050 - 9411657
Alignment:
Q  1 tgtgttatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412050 tgtgttatccccgtaaatttaaggatcatagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtca 9411951  T
Q  101 tcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9411950 tcactacatcaacgacacatcactcttcaacttgtttaagaactgtaagcttctccaagaggttatcatgtttcgctgtcgtagcataaccaaagttggc 9411851  T
Q  201 attgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttggga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411850 attgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaaattaaaaacattgcaatgttgtatgaactcgttggga 9411751  T
Q  301 actatcctttacttagtgagattaaaatggaatacgaaacacttagtgagattagtatagaaaattctaattctttgatgaattttgctgtaag 394  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411750 actatcctttacttagtgagattaaaatggaatacgcaccacttagtgagattagtatagaaaattctaattctttgatgaattttgctgtaag 9411657  T

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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 7555108 - 7554868
Alignment:
Q  14 taaatttaaggatcatag---ctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatc 110  Q
    ||||||||||||||||||   ||| |||||| || | ||||||||||||||| |||||| ||||||||||| ||||||||||||||  ||| ||||||||    
T  7555108 taaatttaaggatcatagtaacttccttaatgggttggagactctttcattggcactttccaaactcaccaggattaatctctctgaccattactacatc 7555009  T
Q  111 aacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggca-ttgtttct 209  Q
    ||||||| ||||||  |  |||||||||||||||| || |||||| |||||||||||||||||   |||  | |||||||||||| ||||| || ||||     
T  7555008 aacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagctggcatttttttca 7554909  T
Q  210 gctctctgtgagagaccaaccttgaggtctttgtcctttac 250  Q
    ||||||  |||||||||||| ||||||||||| ||||||||    
T  7554908 gctctccatgagagaccaacattgaggtctttatcctttac 7554868  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 7554831 - 7554786
Alignment:
Q  290 actcgttgggaactatcctttacttagtgagattaaaatggaatac 335  Q
    |||||||  ||||||||||| |||||||||||||||| ||||||||    
T  7554831 actcgttaagaactatccttcacttagtgagattaaactggaatac 7554786  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 9587154 - 9587021
Alignment:
Q  28 atagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactctt 127  Q
    ||||||||||  || |||| ||||||||||| ||  ||||||||| ||||  ||| |||||||||||||||||   |||| ||||| ||  ||| || ||    
T  9587154 atagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatctctctggtcagagctacctcaacaaccaatcgctttt 9587055  T
Q  128 caacttgtttaagaactgtaaacttctcgaagag 161  Q
    | ||||||| || || ||||| ||||| ||||||    
T  9587054 ccacttgttcaaaaattgtaatcttcttgaagag 9587021  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 28673460 - 28673571
Alignment:
Q  55 tttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttct 154  Q
    |||||||| ||||||||||||||  |||| |||||||||||  |||||||||||||||||||  |||||| ||| | ||| | || |||||||| |||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaacaactgtaagcttct 28673559  T
Q  155 cgaagaggttat 166  Q
    ||||||||||||    
T  28673560 cgaagaggttat 28673571  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 28695700 - 28695821
Alignment:
Q  45 gtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaact 144  Q
    |||||| || |||||||| ||||||||||||||  |||| ||||||||||| |||||||||||||||||| |  | |||| ||| ||||| | || ||||    
T  28695700 gtagaggctatttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaact 28695799  T
Q  145 gtaaacttctcgaagaggttat 166  Q
    | || |||||||||||||||||    
T  28695800 gcaagcttctcgaagaggttat 28695821  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 41886774 - 41886869
Alignment:
Q  47 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 142  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  41886774 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 41886869  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 29021675 - 29021555
Alignment:
Q  46 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 145  Q
    ||||| || |||||||| ||||||| ||||||  |||| || |||||||| |||||  ||| |||||||||  |||||| ||| ||||  | || |||||    
T  29021675 tagaggctatttcattgtcactttttaaactccgcaaggttgatctctctcgtcattgctatatcaacgaccaatcacttttccactttataaacaactg 29021576  T
Q  146 taaacttctcgaagaggttat 166  Q
    ||| ||||||||||| |||||    
T  29021575 taagcttctcgaagaagttat 29021555  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 8186543 - 8186750
Alignment:
Q  52 ctctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaact 151  Q
    ||||||||||| |||||||||||||   |||| ||||||| |||  |||| |||| |||||||||| ||  || ||  ||||||| ||||| ||||| |     
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgtaagca 8186642  T
Q  152 tctcgaagaggttatcatgtttcgctgtcgtagcataaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttact 251  Q
    ||||||||||||||||||||||   |||  |    |||||||||  ||||||| |||||| || || ||||||||||| ||||||||||| ||||||||     
T  8186643 tctcgaagaggttatcatgtttaagtgttctcagttaaccaaagcaggcattgcttctgccctatgggagagaccaacgttgaggtctttatcctttacc 8186742  T
Q  252 aattattt 259  Q
     |||||||    
T  8186743 gattattt 8186750  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 532696 - 532582
Alignment:
Q  48 gagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgta 147  Q
    ||||||||||||||  ||||||||||||||  |||| ||||||| |||  |||| ||||||||||||||  ||| || ||| ||||||| || || ||||    
T  532696 gagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgta 532597  T
Q  148 aacttctcgaagagg 162  Q
    | |||||||| ||||    
T  532596 agcttctcgaggagg 532582  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 1481632 - 1481561
Alignment:
Q  46 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgaca 117  Q
    ||||| ||||||||||| |||| |||||||||  |||| |||||||||||| |||| ||||| |||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgaca 1481561  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 1548016 - 1548092
Alignment:
Q  187 taaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaa 263  Q
    ||||||| ||||| |||| |||||||||| |||||  || ||| || |||||||| |||||||| ||||||||||||    
T  1548016 taaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttgaa 1548092  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 1601221 - 1601179
Alignment:
Q  206 ttctgctctctgtgagagaccaaccttgaggtctttgtccttt 248  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  1601221 ttctgctctccgtgagagaccaacattgaggtctttatccttt 1601179  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 1755397 - 1755308
Alignment:
Q  80 caagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagaggttatcat 169  Q
    ||||||||||||||||  ||||| | |||| ||| ||  |||||| ||   |||||| | |||||||||||||||||||||||| |||||    
T  1755397 caagattaatctctcttttcatcgccacataaacaaccgatcactttttcgcttgttcaggaactgtaaacttctcgaagaggtcatcat 1755308  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 18314832 - 18315010
Alignment:
Q  63 acacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactgtaaacttctcgaagagg 162  Q
    |||||||||||||||   ||| ||||| || ||| |||| |||||||||||||   ||| || ||| ||||||| ||||||||||| ||||||||||||     
T  18314832 acacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagaga 18314931  T
Q  163 ttatcatgtttcgctgtcgtagcataaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtcttt 241  Q
      ||||| |||  ||||| |   |||||||| |  || |||| || ||||||| ||||||||||||| |||||||||||    
T  18314932 caatcatattttactgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaactttgaggtcttt 18315010  T

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