View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_24 (Length: 399)
Name: NF17034_low_24
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 24043328 - 24043698
Alignment:
| Q |
12 |
aagaaaggatttattaacaaacaacattaagataataacataaaaactcattgtactcgttgtgattcctacgtcaagagccaactgttggcattatgaa |
111 |
Q |
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| T |
24043328 |
aagaaaggatttattaacaaacaacattaagataataacataaaaactcattgtactcgttgtgattcctacgtcaagagccaactgttggcattatgaa |
24043427 |
T |
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| Q |
112 |
aaatattctgacaataataattgaaataagttcaaatcttgatgtactttgaaaagggagttaaaatgttgattttaaaaatacaaaataatttataaat |
211 |
Q |
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| T |
24043428 |
aaatattctgacaataataattgaaataagttctaatcttgatgtactttgaaaagggagttaaaatgttgattttaaaaatacaaaataatttataaat |
24043527 |
T |
|
| Q |
212 |
tggatattacatttgtttagtttaaaacaatattgattaaaaagttgacattgcatttcaataatgtaatataataaagttgacttgaacttatcactgt |
311 |
Q |
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| T |
24043528 |
tggatattacatttgtttagtttaaaacaatattgattaaaaagttgacattgcatttcaataatgtaatataataaagttgacttgaacttatcactgt |
24043627 |
T |
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| Q |
312 |
ctcacaaatgacttcatgtcctagatcaaatctgggaattgagaagcttttcattgattttagaacttgct |
382 |
Q |
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| T |
24043628 |
ctcacaaatgacttcatgtcctagatcaaatctgggaattgagaagcttttcattgattttagaacttgct |
24043698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 84 - 285
Target Start/End: Complemental strand, 4278781 - 4278569
Alignment:
| Q |
84 |
gtcaagagccaactgttggcattatgaaaaatattctgacaataataattgaaataagttcaaatcttgatgtactttgaaaagggagttaaaatgttga |
183 |
Q |
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| T |
4278781 |
gtcaagagccacctgttggcattatgaaaaataatctgacaataataattgaaataagttcaaatcttgatgtactttgaaaagggagttaaaatgttga |
4278682 |
T |
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| Q |
184 |
ttttaaaaatacaaaata-----------atttataaattggatattacatttgtttagtttaaaacaatattgattaaaaagttgacattgcatttcaa |
272 |
Q |
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| T |
4278681 |
atttaaaaatacaaaataatgtaataattatttataaatacgatattatatttgtttagtttaaaacaatattgattaaaaagttgacattgcatttcaa |
4278582 |
T |
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| Q |
273 |
taatgtaatataa |
285 |
Q |
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|||||| ||||| |
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| T |
4278581 |
caatgtagtataa |
4278569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 4278569 - 4278503
Alignment:
| Q |
315 |
acaaatgacttcatgtcctagatcaaatctgggaattgagaagcttttcattgattttagaacttgct |
382 |
Q |
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| T |
4278569 |
acaaatgacttca-gtcctagatcaaatttgagaattcgaaagcttttcattgactttagaacttgct |
4278503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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