View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17034_low_29 (Length: 366)
Name: NF17034_low_29
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 198 - 356
Target Start/End: Original strand, 28215611 - 28215769
Alignment:
| Q |
198 |
ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28215611 |
ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatat |
28215710 |
T |
|
| Q |
298 |
tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28215711 |
tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
28215769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 32565382 - 32565537
Alignment:
| Q |
201 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| | |
|
|
| T |
32565382 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt |
32565481 |
T |
|
| Q |
301 |
cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32565482 |
cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctg |
32565537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 32806567 - 32806722
Alignment:
| Q |
201 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| | |
|
|
| T |
32806567 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt |
32806666 |
T |
|
| Q |
301 |
cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32806667 |
cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctg |
32806722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 32815004 - 32815159
Alignment:
| Q |
201 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| | |
|
|
| T |
32815004 |
acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt |
32815103 |
T |
|
| Q |
301 |
cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32815104 |
cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctg |
32815159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 198 - 356
Target Start/End: Complemental strand, 28220610 - 28220455
Alignment:
| Q |
198 |
ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
28220610 |
ggaacctggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatat |
28220514 |
T |
|
| Q |
298 |
tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28220513 |
tctcagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctg |
28220455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 32309453 - 32309298
Alignment:
| Q |
201 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||| | |
|
|
| T |
32309453 |
acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatctt |
32309354 |
T |
|
| Q |
301 |
cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32309353 |
cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctg |
32309298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 32799640 - 32799768
Alignment:
| Q |
228 |
agacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaagaatccttataga |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
32799640 |
agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga |
32799739 |
T |
|
| Q |
328 |
aattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
32799740 |
aattatattgaagattggaaccatctctg |
32799768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 32305385 - 32305344
Alignment:
| Q |
201 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32305385 |
acctggatgaagcaatcatgaaagaagagacgaagaagagaa |
32305344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 28220745 - 28220694
Alignment:
| Q |
22 |
agaacacaaaaaatttaggatatctattagtattcactactatttcataaccaat |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28220745 |
agaacacaaaaaatttaggatatctattagtattc---actatttcataaccaat |
28220694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 28215474 - 28215532
Alignment:
| Q |
18 |
aaatagaacacaaaaaatttaggatatctattagtattcactactatttcataaccaatcaa |
79 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
28215474 |
aaatagaacacaaaaaatttaggatatttattggtattc---actatttcataaccaatcaa |
28215532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 204 - 356
Target Start/End: Complemental strand, 301596 - 301444
Alignment:
| Q |
204 |
tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||| |||| |
|
|
| T |
301596 |
tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcag |
301497 |
T |
|
| Q |
304 |
cttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctg |
356 |
Q |
| |
|
||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
301496 |
cttgagggctagaatccctatagaaattatattgaagattggaaccatctctg |
301444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University