View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_30 (Length: 357)
Name: NF17034_low_30
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 45144886 - 45144682
Alignment:
| Q |
18 |
catcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatcttgaatgtctactgcaataacaaatgctccatt |
117 |
Q |
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| T |
45144886 |
catcacaatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatcttgaatgtctactgcaataacaaatgctccatt |
45144787 |
T |
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| Q |
118 |
ttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaattttgtcataatatattat |
217 |
Q |
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| T |
45144786 |
ttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaattttgtcataatatattat |
45144687 |
T |
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| Q |
218 |
gcaag |
222 |
Q |
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||||| |
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| T |
45144686 |
gcaag |
45144682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 45144616 - 45144558
Alignment:
| Q |
288 |
ctactatagagaaaatacaaaggattgaattagagacatatatagggtacctttgcttc |
346 |
Q |
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| T |
45144616 |
ctactatagagaaaatacaaaggattgaattagagacatatatagggtacctttgcttc |
45144558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 12701256 - 12701432
Alignment:
| Q |
23 |
caatgatggtatgttactttgtctgagcctattgaatctgcaactttatgacccaattcatcttgaatgtctactgcaataacaaatgctccattttcgg |
122 |
Q |
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| T |
12701256 |
caatgatggtatgtcactttatttgaacctattgaagatacaacttgatgacctaattcatcttgaatgtctactgcaacaacaaatgctccattttcga |
12701355 |
T |
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| Q |
123 |
cgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaat |
199 |
Q |
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| T |
12701356 |
cgaacaacttcactgcgtctttaccaattccactggctgcaccagtgatgattgctatcttaccctctaacctaaat |
12701432 |
T |
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