View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_low_31 (Length: 314)

Name: NF17034_low_31
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_low_31
NF17034_low_31
[»] chr1 (5 HSPs)
chr1 (11-297)||(11703645-11703932)
chr1 (168-239)||(28357052-28357124)
chr1 (179-250)||(33262256-33262326)
chr1 (179-250)||(33282415-33282485)
chr1 (122-196)||(11957723-11957797)
[»] chr7 (4 HSPs)
chr7 (122-266)||(31489995-31490141)
chr7 (122-196)||(33686282-33686356)
chr7 (122-196)||(37001613-37001687)
chr7 (192-263)||(25609501-25609573)
[»] chr8 (8 HSPs)
chr8 (117-259)||(15818005-15818145)
chr8 (122-199)||(29352078-29352155)
chr8 (122-196)||(9175844-9175918)
chr8 (122-199)||(15862995-15863072)
chr8 (179-263)||(28427113-28427197)
chr8 (122-198)||(32539851-32539927)
chr8 (122-196)||(16787399-16787473)
chr8 (122-198)||(379143-379219)
[»] chr5 (2 HSPs)
chr5 (122-251)||(27750878-27751007)
chr5 (122-194)||(24793143-24793215)
[»] scaffold0166 (1 HSPs)
scaffold0166 (122-194)||(35526-35598)
[»] scaffold0154 (1 HSPs)
scaffold0154 (122-196)||(31935-32009)
[»] chr6 (6 HSPs)
chr6 (122-196)||(31028332-31028406)
chr6 (126-231)||(31878142-31878244)
chr6 (180-225)||(30132840-30132884)
chr6 (204-263)||(12776313-12776373)
chr6 (179-260)||(9487591-9487672)
chr6 (151-196)||(28931729-28931773)
[»] scaffold0004 (2 HSPs)
scaffold0004 (179-263)||(128182-128266)
scaffold0004 (205-261)||(127400-127457)
[»] chr4 (4 HSPs)
chr4 (123-196)||(29523902-29523975)
chr4 (173-260)||(35218130-35218218)
chr4 (122-195)||(4038078-4038151)
chr4 (205-254)||(38193575-38193626)
[»] chr3 (7 HSPs)
chr3 (116-197)||(27912717-27912798)
chr3 (117-210)||(31807311-31807403)
chr3 (167-246)||(37525594-37525672)
chr3 (122-196)||(19814538-19814611)
chr3 (122-196)||(27935895-27935969)
chr3 (122-195)||(35514718-35514791)
chr3 (122-195)||(38283091-38283164)
[»] chr2 (4 HSPs)
chr2 (122-198)||(816273-816349)
chr2 (122-196)||(4554567-4554641)
chr2 (122-196)||(18364794-18364868)
chr2 (145-199)||(30325600-30325654)
[»] scaffold0515 (1 HSPs)
scaffold0515 (179-250)||(11889-11960)
[»] scaffold0152 (3 HSPs)
scaffold0152 (179-250)||(19459-19530)
scaffold0152 (179-250)||(33182-33253)
scaffold0152 (179-250)||(38285-38356)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 11703932 - 11703645
Alignment:
Q  11 agaatatgggacccacatgttgaatttgttcatgannnnnnnattgcatatttaggacattaaattatgaattttcacataaaattacaatttccaatat 110  Q
    |||| |||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11703932 agaaaatgggacccacatgttgaatttgttcattatttttttattgcatatttaggacattaaattatgaattttcacataaaattacaatttccaatat 11703833  T
Q  111 catatggattcattatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttgg-tatttttac 209  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||    
T  11703832 cagatggatttattatgaatttttaaagcaccataaacttaaaaaacaaagcaacagaaatctcaacatagaaatcgagttttgagttggttttttttac 11703733  T
Q  210 aaacacctctataaaatacatagagaggatttgaaaagttttgtagcattccaattatcattgaacctttcttaatgagattaaatac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11703732 aaacacctctataaaatacatagagaggatttgaaaagttttgtagcattccaactatcattgaacctttcttaatgagattaaatac 11703645  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 28357052 - 28357124
Alignment:
Q  168 aaatctcaacatagaaatcgaattttgagttggtatttttacaaacacctctata-aaatacatagagaggat 239  Q
    ||||||| ||||| ||||||||||||||| |||| |||||||| ||| ||||||| |||||||||||||||||    
T  28357052 aaatctcgacatataaatcgaattttgagatggtttttttacagacatctctatataaatacatagagaggat 28357124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 33262256 - 33262326
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataaaatacatagagaggatttgaaaagttt 250  Q
    ||||||| ||||||||||||| | |||  ||| | |||||||||||||||||||||||||  ||||||||||    
T  33262256 tagaaattgaattttgagttgtt-tttacacagatacctctataaaatacatagagaggacctgaaaagttt 33262326  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 33282415 - 33282485
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataaaatacatagagaggatttgaaaagttt 250  Q
    ||||||| ||||||||||||| | |||  ||| | |||||||||||||||||||||||||  ||||||||||    
T  33282415 tagaaattgaattttgagttgtt-tttacacagatacctctataaaatacatagagaggacctgaaaagttt 33282485  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 11957723 - 11957797
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||   || ||||| |||||||||| ||||  ||||||| || || |||||||||||||||    
T  11957723 attatgaatttttaaagtgtcaaaaactcaaaaaacaaaacaacggaaatctcgacctataaatcgaattttgag 11957797  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 31490141 - 31489995
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaac-aaagcaacaaaaatctcaacatagaaatcgaattttgagttggtatttttacaaacacctcta 220  Q
    |||||||||||||||| || || ||||| ||||||  ||| |||  ||||||||||  ||||||||||||||||||||||| ||| ||  ||||||||||    
T  31490141 attatgaatttttaaaacagcaaaaactcaaaaaaataaaacaatgaaaatctcaatctagaaatcgaattttgagttggtttttatatgaacacctcta 31490042  T
Q  221 t-aaaatacatagagaggatttgaaaagttttgtagcattccaatta 266  Q
    | |||||||||||||   | ||  ||||||||||||||||| |||||    
T  31490041 taaaaatacatagagtaaaattataaagttttgtagcattctaatta 31489995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 33686356 - 33686282
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    ||||||||||||||||||  || || || |||||||||| |||| |||||||| || || |||||||||||||||    
T  33686356 attatgaatttttaaagcgtcaaaagctcaaaaaacaaaacaacgaaaatctcgacctataaatcgaattttgag 33686282  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 37001613 - 37001687
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||   ||||| || |||||||||| |||  |||||||| || || |||||||||||||||    
T  37001613 attatgaatttttaaagtgtcataagctcaaaaaacaaaacaatgaaaatctcgacctataaatcgaattttgag 37001687  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 25609501 - 25609573
Alignment:
Q  192 ttgagttggtatttttacaaacacctctataaaa-tacatagagaggatttgaaaagttttgtagcattccaa 263  Q
    |||||||||| ||||| | ||||| ||||||||| |||||| ||||||  || ||||||| ||||||||||||    
T  25609501 ttgagttggtttttttgctaacacatctataaaaatacatacagaggacctgtaaagtttcgtagcattccaa 25609573  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 15818145 - 15818005
Alignment:
Q  117 gattcattatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttggtatttttacaaacacc 216  Q
    |||| |||||||||||||||||| ||| ||| |||||| |||||  |||  |||| ||||| ||||| || ||||||||||||  |||||| ||  ||      
T  15818145 gattaattatgaatttttaaagcgccaaaaatttaaaatacaaaa-aactgaaatatcaacttagaagtcaaattttgagttg--atttttgcatgcaag 15818049  T
Q  217 tctataaa-atacatagagaggatttgaaaagttttgtagcatt 259  Q
    ||||| || || ||||||||||||||||||||||||||||||||    
T  15818048 tctatcaacatgcatagagaggatttgaaaagttttgtagcatt 15818005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 29352155 - 29352078
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttg 199  Q
    |||||||||||||||||| ||| ||||| |||||||||| |||| |||  | |||| |||||||||| ||||||||||    
T  29352155 attatgaatttttaaagcgccaaaaactcaaaaaacaaaacaacgaaatccccaacctagaaatcgacttttgagttg 29352078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 9175918 - 9175844
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    ||||||||||||||||||  || ||||  |||||||||| |||| |||||||| || || |||||||||||||||    
T  9175918 attatgaatttttaaagcgtcaaaaacccaaaaaacaaaacaacgaaaatctcgacctataaatcgaattttgag 9175844  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 15862995 - 15863072
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttg 199  Q
    |||||||||||||||||| ||| ||||| |||||||| | |||| ||||  ||||  ||||||| |||||||||||||    
T  15862995 attatgaatttttaaagcgccaaaaactcaaaaaacagaacaacgaaaacttcaatctagaaattgaattttgagttg 15863072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 28427197 - 28427113
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataaaa-tacatagagaggatttgaaaagttttgtagcattccaa 263  Q
    |||||||||||||||||  || | ||||| || |||||||||||||| |||||| ||||||| |  ||||||||||||||||||||    
T  28427197 tagaaatcgaattttgaactgct-tttttgcagacacctctataaaaatacatatagaggatctataaagttttgtagcattccaa 28427113  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 32539851 - 32539927
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagtt 198  Q
    ||||||||||||||||||  || ||||  |||||||||| ||||  ||||||| || || |||||||||||||||||    
T  32539851 attatgaatttttaaagcgacaaaaacacaaaaaacaaaacaacggaaatctcgacctataaatcgaattttgagtt 32539927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 16787399 - 16787473
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||   || ||||| |||||||||| |||  |||||||| || || |||||||||||||||    
T  16787399 attatgaatttttaaagtgtcaaaaactcaaaaaacaaaacaatgaaaatctcgacctataaatcgaattttgag 16787473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 379219 - 379143
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagtt 198  Q
    |||||||||||||||||   || ||||| |||||||||| ||||  ||||||| || || ||||| |||||||||||    
T  379219 attatgaatttttaaagtgtcaaaaactcaaaaaacaaaacaacggaaatctcgacctataaatcaaattttgagtt 379143  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 27751007 - 27750878
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttg-gtatttttacaaacacctcta 220  Q
    |||||||||||||||||| | | ||||| ||| |||||| ||||||||||||| || |||| || |||||||||||||  | |||||| | ||| || ||    
T  27751007 attatgaatttttaaagcgcaaaaaactcaaataacaaaacaacaaaaatctcgacctagagattgaattttgagttgtttctttttaaagacatctata 27750908  T
Q  221 taaaatacatagagaggatttgaaaagtttt 251  Q
     |||||||||| | |||||||| ||||||||    
T  27750907 -aaaatacataaaaaggatttgcaaagtttt 27750878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 24793215 - 24793143
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttg 194  Q
    ||||||||||||||||||  || ||||| |||||||||| |||||||||  ||||| || |||||||||||||    
T  24793215 attatgaatttttaaagcgtcaaaaactcaaaaaacaaaacaacaaaaacttcaacctataaatcgaattttg 24793143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 35598 - 35526
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttg 194  Q
    ||||||||||||||||||  || ||||| |||||||||| |||||||||  ||||| || |||||||||||||    
T  35598 attatgaatttttaaagcgtcaaaaactcaaaaaacaaaacaacaaaaacttcaacctataaatcgaattttg 35526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 32009 - 31935
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||   || || || |||||||||| ||||| |||||||||| || |||||||||||||||    
T  32009 attatgaatttttaaagtgtcaaaagctcaaaaaacaaaacaacagaaatctcaacttataaatcgaattttgag 31935  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 31028332 - 31028406
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||   || ||||| |||||||||| |||| |||||||| || || |||||||||||||||    
T  31028332 attatgaatttttaaagtgtcaaaaactcaaaaaacaaaacaacgaaaatctcgacctataaatcgaattttgag 31028406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 31878244 - 31878142
Alignment:
Q  126 tgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttggtatttttacaaacacctctataaaa 225  Q
    |||||||| ||||||||| ||| | ||||||||||  ||  |||| |||||| ||||||||||||||||| |||  ||||||  ||| ||||||||||||    
T  31878244 tgaattttaaaagcaccaaaaattcaaaaaacaaaa-aatgaaaacctcaacctagaaatcgaattttgaattg--atttttttaaaaacctctataaaa 31878148  T
Q  226 tacata 231  Q
    ||||||    
T  31878147 tacata 31878142  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 30132884 - 30132840
Alignment:
Q  180 agaaatcgaattttgagttggtatttttacaaacacctctataaaa 225  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  30132884 agaaatcgaattttgagttggt-tttttgcaaacacctctataaaa 30132840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 12776313 - 12776373
Alignment:
Q  204 ttttacaaacacctctataaaa-tacatagagaggatttgaaaagttttgtagcattccaa 263  Q
    ||||||| |||||||||||||| |||||| ||| ||| |||||||||||||| ||||||||    
T  12776313 ttttacagacacctctataaaaatacatatagatgatgtgaaaagttttgtaacattccaa 12776373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 9487672 - 9487591
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctat-aaaatacatagagaggatttgaaaagttttgtagcattc 260  Q
    |||||||||||||||||| |||| |||| ||||||||||| || |||||||||| ||||||| ||  |||||| |||| ||||    
T  9487672 tagaaatcgaattttgagctggt-ttttaacaaacacctcaataaaaatacataaagaggatctgttaagtttcgtagaattc 9487591  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 28931773 - 28931729
Alignment:
Q  151 aaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||    
T  28931773 aaaaaacaaatcaacaaaaa-ctcaacctagaaatcgaattttgag 28931729  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 128182 - 128266
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataaaa-tacatagagaggatttgaaaagttttgtagcattccaa 263  Q
    |||||||||||||||||  || | ||||| || |||||||||||||| |||||| ||||||| |  ||||||||||||||||||||    
T  128182 tagaaatcgaattttgaactgct-tttttgcagacacctctataaaaatacatatagaggatctataaagttttgtagcattccaa 128266  T

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Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 127400 - 127457
Alignment:
Q  205 tttacaaacacctctataaaa-tacatagagaggatttgaaaagttttgtagcattcc 261  Q
    |||||| |||||||||||||| |||||| ||| ||| |||||||||||||| ||||||    
T  127400 tttacatacacctctataaaaatacatatagatgatgtgaaaagttttgtaacattcc 127457  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 29523902 - 29523975
Alignment:
Q  123 ttatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||  ||  |||| ||||| |||| |||| ||||||||||| |||||||| |||||||||    
T  29523902 ttatgaatttttaaagcgtcaacaactcaaaaatcaaaacaactaaaatctcaacttagaaatcaaattttgag 29523975  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 35218218 - 35218130
Alignment:
Q  173 tcaacatagaaatcgaattttgagttggtatttttacaaacacctctat-aaaatacatagagaggatttgaaaagttttgtagcattc 260  Q
    ||||| ||||||||||||||||||||| | || || || |||||||||| |||||| ||| ||| ||| ||||||||||  ||||||||    
T  35218218 tcaacttagaaatcgaattttgagttgcttttattccagacacctctataaaaatatatatagacgatctgaaaagtttcatagcattc 35218130  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 4038078 - 4038151
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttga 195  Q
    |||||||||||||||| | ||| || || |||||||||| |||| |||||| ||| |||  |||||||||||||    
T  4038078 attatgaatttttaaacctccaaaatctcaaaaaacaaaacaacgaaaatcacaatatatgaatcgaattttga 4038151  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 38193575 - 38193626
Alignment:
Q  205 tttacaaacacctctat--aaaatacatagagaggatttgaaaagttttgta 254  Q
    |||||||||||||||||  |||||||||| ||| ||| ||||||||||||||    
T  38193575 tttacaaacacctctataaaaaatacatatagatgatgtgaaaagttttgta 38193626  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 27912798 - 27912717
Alignment:
Q  116 ggattcattatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagt 197  Q
    ||||| |||||||||||||||||| ||| ||| | |||||| ||| ||||||  ||||| || || ||||||||||||||||    
T  27912798 ggattgattatgaatttttaaagctccaaaaattcaaaaaataaaacaacaattatctcgacctataaatcgaattttgagt 27912717  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 31807311 - 31807403
Alignment:
Q  117 gattcattatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttggtatttttaca 210  Q
    |||| ||||| |||||||||||| ||| ||||| || ||| ||| ||||| |||||||||  |||||||  |||||||||||||| ||||||||    
T  31807311 gattaattataaatttttaaagcgccaaaaactcaacaaaaaaa-caacacaaatctcaatctagaaatgaaattttgagttggtttttttaca 31807403  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 37525594 - 37525672
Alignment:
Q  167 aaaatctcaacatagaaatcgaattttgagttggtatttttacaaacacctctat-aaaatacatagagaggatttgaaaa 246  Q
    ||||| || |||||||||||||||||||||||  | ||||| || |||||||||| |||||||||| ||||||| ||||||    
T  37525594 aaaatatcgacatagaaatcgaattttgagtt--tttttttgcagacacctctataaaaatacatatagaggatctgaaaa 37525672  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 19814538 - 19814611
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||| ||||||||   || ||||| |||||||||| |||| |||| | |||||||||||||||||||||||    
T  19814538 attatgaaattttaaagggtcaaaaactcaaaaaacaaaacaactaaaa-cacaacatagaaatcgaattttgag 19814611  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 27935969 - 27935895
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    ||||||||||||||||||  || || || |||||||||| ||||  ||||||| || || |||||||||||||||    
T  27935969 attatgaatttttaaagcgtcaaaagctcaaaaaacaaaacaacggaaatctcgacctataaatcgaattttgag 27935895  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 35514791 - 35514718
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttga 195  Q
    |||||||||||||||||   || || || |||||||||| ||||| ||||||| || || ||||||||||||||    
T  35514791 attatgaatttttaaagtgtcaaaagctcaaaaaacaaaacaacagaaatctcgacttataaatcgaattttga 35514718  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 38283164 - 38283091
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttga 195  Q
    |||||||||||||||||    | |||||||||||||||| ||||| ||||||| || || ||||| ||||||||    
T  38283164 attatgaatttttaaagtgttaaaaacttaaaaaacaaaacaacagaaatctcgacctataaatcaaattttga 38283091  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 816273 - 816349
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctca-acatagaaatcgaattttgagtt 198  Q
    ||||||||||||| |||| ||| ||||| |||||||||| ||||| |||||||  || ||||||||||||||||||||    
T  816273 attatgaatttttcaagcgccaaaaact-aaaaaacaaaacaacagaaatctctgacttagaaatcgaattttgagtt 816349  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 4554567 - 4554641
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||   || ||||| |||||||||| ||||  ||||||| || || |||||||||||||||    
T  4554567 attatgaatttttaaagtgtcaaaaactcaaaaaacaaaacaacggaaatctcgacctataaatcgaattttgag 4554641  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 18364794 - 18364868
Alignment:
Q  122 attatgaatttttaaagcaccataaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgag 196  Q
    |||||||||||||||||| ||  ||||| |||| ||||| |||| |||||||| |  |||||||| |||||||||    
T  18364794 attatgaatttttaaagcgccgaaaactcaaaacacaaaacaacgaaaatctccatctagaaatcaaattttgag 18364868  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 30325600 - 30325654
Alignment:
Q  145 aaacttaaaaaacaaagcaacaaaaatctcaacatagaaatcgaattttgagttg 199  Q
    ||||||| |||||||| ||||||||||||| || || ||||| ||||||||||||    
T  30325600 aaacttagaaaacaaaacaacaaaaatctcgacctaaaaatcaaattttgagttg 30325654  T

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Target: scaffold0515 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 11960 - 11889
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataa-aatacatagagaggatttgaaaagttt 250  Q
    |||||||||||||||||| |||| ||||| || ||||||| |||| |||||||  ||||||| ||||||||||    
T  11960 tagaaatcgaattttgagctggt-tttttgcagacacctcaataataatacatctagaggatctgaaaagttt 11889  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 19530 - 19459
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataa-aatacatagagaggatttgaaaagttt 250  Q
    |||||||||||||||||| |||| ||||| || ||||||| |||| |||||||  ||||||| ||||||||||    
T  19530 tagaaatcgaattttgagctggt-tttttgcagacacctcaataataatacatctagaggatctgaaaagttt 19459  T

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Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 33182 - 33253
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataa-aatacatagagaggatttgaaaagttt 250  Q
    |||||||||||||||||| |||| ||||| || ||||||| |||| |||||||  ||||||| ||||||||||    
T  33182 tagaaatcgaattttgagctggt-tttttgcagacacctcaataataatacatctagaggatctgaaaagttt 33253  T

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Target: scaffold0152; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 38356 - 38285
Alignment:
Q  179 tagaaatcgaattttgagttggtatttttacaaacacctctataa-aatacatagagaggatttgaaaagttt 250  Q
    |||||||||||||||||| |||| ||||| || ||||||| |||| |||||||  ||||||| ||||||||||    
T  38356 tagaaatcgaattttgagctggt-tttttgcagacacctcaataataatacatctagaggatctgaaaagttt 38285  T

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