View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_low_34 (Length: 285)

Name: NF17034_low_34
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_low_34
NF17034_low_34
[»] chr2 (7 HSPs)
chr2 (19-275)||(13486651-13486907)
chr2 (33-98)||(19913980-19914045)
chr2 (54-111)||(13133064-13133121)
chr2 (52-117)||(23683082-23683147)
chr2 (47-98)||(28154220-28154271)
chr2 (52-115)||(34977618-34977681)
chr2 (52-116)||(31482358-31482422)
[»] chr5 (7 HSPs)
chr5 (36-107)||(18482402-18482473)
chr5 (54-111)||(26498345-26498402)
chr5 (51-109)||(23883272-23883330)
chr5 (33-106)||(30997590-30997663)
chr5 (52-117)||(36731127-36731192)
chr5 (33-109)||(9844717-9844793)
chr5 (36-107)||(20321836-20321907)
[»] chr8 (5 HSPs)
chr8 (39-107)||(19996619-19996687)
chr8 (51-126)||(35620060-35620134)
chr8 (48-107)||(15760792-15760851)
chr8 (51-115)||(9942738-9942802)
chr8 (52-118)||(18550364-18550430)
[»] chr7 (3 HSPs)
chr7 (33-96)||(10293281-10293344)
chr7 (36-115)||(1528594-1528672)
chr7 (51-115)||(24508577-24508641)
[»] chr4 (2 HSPs)
chr4 (52-115)||(19799172-19799235)
chr4 (36-111)||(14041277-14041352)
[»] scaffold0015 (1 HSPs)
scaffold0015 (52-106)||(29985-30039)
[»] chr3 (3 HSPs)
chr3 (54-111)||(8838504-8838561)
chr3 (54-111)||(55312440-55312497)
chr3 (55-95)||(22444197-22444237)
[»] chr1 (3 HSPs)
chr1 (42-96)||(30618361-30618415)
chr1 (52-117)||(37736592-37736657)
chr1 (72-118)||(9801591-9801637)
[»] chr6 (2 HSPs)
chr6 (69-115)||(15483679-15483724)
chr6 (42-107)||(5918599-5918664)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 13486907 - 13486651
Alignment:
Q  19 agtcactacttctgcagcctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13486907 agtcactacttctgcagcctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaaga 13486808  T
Q  119 agataagagaaagaatcataccaagagagatagaggacattttaggacatttactcttttctcttttgatctagttatagttatttttatgcttccatta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13486807 agataagagaaagaatcataccaagagagatagaggacattttaggacatttactcttttctcttttgatctagttatagttattttcatgcttccatta 13486708  T
Q  219 tataaacactcttgtactccttcattcatttgtaagatttttcccttttttattcat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13486707 tataaacactcttgtactccttcattcatttgtaagatttttcccttttttattcat 13486651  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 19914045 - 19913980
Alignment:
Q  33 cagcctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtggg 98  Q
    |||||||| |||||| |  |||||||||||||| |||||||||| |||||||||||||||||||||    
T  19914045 cagccttttaatcttttgttatccaagttggggttgttggatatataccaacctccaacttgtggg 19913980  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 13133064 - 13133121
Alignment:
Q  54 tccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcaca 111  Q
    ||||||||||||||||| || |||||||| ||||||||||||||| ||||||| ||||    
T  13133064 tccaagttggggatgttagacatctaccaccctccaacttgtggggggatattacaca 13133121  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 23683082 - 23683147
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaag 117  Q
    |||||||||||||  || | ||||| |||||||||||| ||||||||||| ||||||| |||||||    
T  23683082 tatccaagttgggattggtagatatttaccaacctccatcttgtgggaggctattgcataatgaag 23683147  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 28154271 - 28154220
Alignment:
Q  47 tcttctatccaagttggggatgttggatatctaccaacctccaacttgtggg 98  Q
    |||||||||||||||||||||| |  |||| | |||||||||||||||||||    
T  28154271 tcttctatccaagttggggatggtcaatatatgccaacctccaacttgtggg 28154220  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 34977681 - 34977618
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatga 115  Q
    |||||||||||||| || ||||||||||||||||||| | |||| || ||||||| || |||||    
T  34977681 tatccaagttggggttgatggatatctaccaacctcctatttgtagggggatattacataatga 34977618  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 31482422 - 31482358
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaa 116  Q
    ||||||||||||| ||  | || || ||||| ||||||||||||||| ||||||||||| |||||    
T  31482422 tatccaagttgggtatagtagacatttaccaccctccaacttgtggggggatattgcaccatgaa 31482358  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 18482473 - 18482402
Alignment:
Q  36 cctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattg 107  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||| ||||||||    
T  18482473 cctttcaatctacttctatccaagttggggatgttatatatctaccatcctccaacttgtggggggatattg 18482402  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 26498345 - 26498402
Alignment:
Q  54 tccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcaca 111  Q
    ||||||||||||||||| || |||||||| ||||||||||||||| ||||||| ||||    
T  26498345 tccaagttggggatgttagacatctaccaccctccaacttgtggggggatattacaca 26498402  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 23883330 - 23883272
Alignment:
Q  51 ctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgca 109  Q
    ||||||||||||||  || | |||||||||||||||||| ||||||||||| |||||||    
T  23883330 ctatccaagttgggattggtagatatctaccaacctccaccttgtgggaggctattgca 23883272  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 30997663 - 30997590
Alignment:
Q  33 cagcctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatatt 106  Q
    |||||||||||   ||||||||||||||| ||| || |||||   |||||||||| ||||||||||||||||||    
T  30997663 cagcctttcaacactcttctatccaagttagggttgctggattcgtaccaacctctaacttgtgggaggatatt 30997590  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 36731192 - 36731127
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaag 117  Q
    |||||||||||||  || | ||||| |||||||||||| ||||||||||| ||||||| |||||||    
T  36731192 tatccaagttgggattggtagatatttaccaacctccatcttgtgggaggctattgcataatgaag 36731127  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 9844793 - 9844717
Alignment:
Q  33 cagcctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgca 109  Q
    |||||||||||| | ||  ||||||||||||| ||| |  |||| |||  |||||||||||||||||||||||||||    
T  9844793 cagcctttcaatttgctattatccaagttgggaatgattaatatttactcacctccaacttgtgggaggatattgca 9844717  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 20321907 - 20321836
Alignment:
Q  36 cctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattg 107  Q
    ||||| ||||||||||||||||||||| |  |||| || || |||||||||||| |||||||| || |||||    
T  20321907 ccttttaatcttcttctatccaagttgagcttgttagacatttaccaacctccagcttgtggggggctattg 20321836  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 19996619 - 19996687
Alignment:
Q  39 ttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattg 107  Q
    |||||| | ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||    
T  19996619 ttcaatttacttctatccaagttggggatgttagatatataccaccctccaacttgtggggggatattg 19996687  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 35620060 - 35620134
Alignment:
Q  51 ctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaagaagataaga 126  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||| |||||| ||| ||||    
T  35620060 ctatccaagttggggatgttagatatctaccaaccttcaacttgtggg-gggtattgcaccatgaagtagaaaaga 35620134  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 15760792 - 15760851
Alignment:
Q  48 cttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattg 107  Q
    ||||||||||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||    
T  15760792 cttctatccaagttgggaatgttagatatctaccatcctcgaacttgtggggggatattg 15760851  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 9942802 - 9942738
Alignment:
Q  51 ctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatga 115  Q
    |||||||||||||||||| | ||||||||||| |||||||| |||||| ||||||| ||| ||||    
T  9942802 ctatccaagttggggatgatagatatctaccagcctccaacatgtggggggatattacaccatga 9942738  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 18550430 - 18550364
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaaga 118  Q
    |||||||||||||  || | ||||| |||||||||||||||||| ||||| ||||||| | ||||||    
T  18550430 tatccaagttgggattggtagatatttaccaacctccaacttgtaggaggctattgcatactgaaga 18550364  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 10293281 - 10293344
Alignment:
Q  33 cagcctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtg 96  Q
    ||||||||||||||  |  |||||||||||||| |||||||||| |||||||||||||||||||    
T  10293281 cagcctttcaatctattgttatccaagttggggttgttggatatataccaacctccaacttgtg 10293344  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 1528672 - 1528594
Alignment:
Q  36 cctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatga 115  Q
    ||||| |||||| | |||||||| |||||  |||||||||| |||||||||||| |||||||| || |||||||||||||    
T  1528672 ccttttaatcttttgctatccaatttgggattgttggatatataccaacctccaccttgtggg-gggtattgcacaatga 1528594  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 24508577 - 24508641
Alignment:
Q  51 ctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatga 115  Q
    |||||||| ||||||||| |  | ||||||||| |||||||||||||||||||||| ||| ||||    
T  24508577 ctatccaaattggggatgatatacatctaccaatctccaacttgtgggaggatattacaccatga 24508641  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 19799235 - 19799172
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatga 115  Q
    |||||||||||||| |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  19799235 tatccaagttggggttgttagatatataccaacctccaacttgcggggggatattacacaatga 19799172  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 14041277 - 14041352
Alignment:
Q  36 cctttcaatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcaca 111  Q
    ||||| |||||||| || |||||||||||  |||| || ||||||||||||||| |||||||| ||||||| ||||    
T  14041277 ccttttaatcttctactttccaagttgggattgttagacatctaccaacctccatcttgtggggggatattacaca 14041352  T

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Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 29985 - 30039
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatatt 106  Q
    ||||||||||||||||| | ||||||||||| || ||||||||||||||||||||    
T  29985 tatccaagttggggatgatagatatctaccacccgccaacttgtgggaggatatt 30039  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 8838504 - 8838561
Alignment:
Q  54 tccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcaca 111  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||    
T  8838504 tccaagttggggatgttagatatttaccaccctccaacttgtggggggatattacaca 8838561  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 55312440 - 55312497
Alignment:
Q  54 tccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcaca 111  Q
    ||||||||||||||||| || |||||||| ||||||||||||||| ||||||| ||||    
T  55312440 tccaagttggggatgttagacatctaccaccctccaacttgtggggggatattacaca 55312497  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 22444197 - 22444237
Alignment:
Q  55 ccaagttggggatgttggatatctaccaacctccaacttgt 95  Q
    |||||||||||||| | ||||||||||| ||||||||||||    
T  22444197 ccaagttggggatgattgatatctaccaccctccaacttgt 22444237  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 30618415 - 30618361
Alignment:
Q  42 aatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtg 96  Q
    |||||||| |||||||||||||||||| | || || |||||||||||||||||||    
T  30618415 aatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtg 30618361  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 37736657 - 37736592
Alignment:
Q  52 tatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattgcacaatgaag 117  Q
    |||||||||||||  || | ||||| |||||||||||| ||||||||||| ||||||| |||||||    
T  37736657 tatccaagttgggattggtagatatttaccaacctccatcttgtgggaggctattgcataatgaag 37736592  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 9801637 - 9801591
Alignment:
Q  72 gatatctaccaacctccaacttgtgggaggatattgcacaatgaaga 118  Q
    ||||| |||||||||||||||||||||||| ||||||| | ||||||    
T  9801637 gatatttaccaacctccaacttgtgggaggctattgcatagtgaaga 9801591  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 15483724 - 15483679
Alignment:
Q  69 ttggatatctaccaacctccaacttgtgggaggatattgcacaatga 115  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||    
T  15483724 ttggatatataccaacctccaacttatggg-ggatattgcacaatga 15483679  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 5918664 - 5918599
Alignment:
Q  42 aatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtgggaggatattg 107  Q
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T  5918664 aatcttcttttatccaagctgggcttgttagatatttaccaacctccagcttgtggggggctattg 5918599  T

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