View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_35 (Length: 285)
Name: NF17034_low_35
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 36718722 - 36718985
Alignment:
| Q |
13 |
aatattgcttgataatagaccgaccgagctgaataatttccacggttgctaatcctccaaattggaaattattatcat-----attaaatttgctacctt |
107 |
Q |
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| T |
36718722 |
aatattgcttgataataggctgaccgagctgaataatttctacggttgctaatcctccaaattggcaattattatcatgaatgattaaatttgctacctt |
36718821 |
T |
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| Q |
108 |
cataatttttgtccctaggattggtggtgacatcaaaaaagcattcgcattgtcacgaagccatggttgataccaaacactaacatctgagtcatctatg |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36718822 |
catattttttgtccctaggattggtggtgacatcaaaaaagcattcgcgttgtcacgaagccatggttgataccaaacactaacatctgagtcatctatg |
36718921 |
T |
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| Q |
208 |
attttccattttactcctcccttgatcactacatgtgaagcttagatactaggccacaaaaact |
271 |
Q |
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| T |
36718922 |
attttccattttactcctcccttgatcactacatgtgaagcttagatagtaggccacaaaaact |
36718985 |
T |
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