View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_low_36 (Length: 283)

Name: NF17034_low_36
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_low_36
NF17034_low_36
[»] chr8 (1 HSPs)
chr8 (1-283)||(10858932-10859214)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 10859214 - 10858932
Alignment:
Q  1 cctgaaatttaactcccaacaacttgtgtgcattgatggtacctggacagaaagtttccatcttgtgacagttgattacaaacacgtgctccaaggatgg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10859214 cctgaaatttaacttccaacaacttgtgtgcattgatggtacctggacagaaagtttccattttgtgacagttgattacaaacacgtgctccaaggatgg 10859115  T
Q  101 aaaacacagagtaaaattccctgaataaaagcacttgagttcatgtaaatctttaagatacaaagcctggagctcctcaaatattatcttttcaacctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10859114 aaaacacagagtaaaattccctgaataaaagcacttgagttcatgtaaatctttaagatacaaagcctggagctcctcaaatattatcttttcaacctca 10859015  T
Q  201 tccgatgcatcaccttcatgagatgcaaaactctccaaaattgttcctttgggatatgcattattctctgcaacaataaccat 283  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10859014 tccgatgcatcaacttcatgagatgcaaaactctccaaaattgttcctttgggatatgcattattctctgcaacaataaccat 10858932  T

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