View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_38 (Length: 271)
Name: NF17034_low_38
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 37605449 - 37605659
Alignment:
| Q |
19 |
agacaaatacaaattcaaaagcatctgaacttttttgatgcacaactatcattcacaggcatttaccttgataattgcccaaaatggcactgcacaaaca |
118 |
Q |
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| T |
37605449 |
agacaaatacaaattcaaaagcatctgaacttttttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaaca |
37605548 |
T |
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| Q |
119 |
cacacaaattcatcatgcactccatcctctgatatttgcaaacataaacattatttttctgctagtatcgattcaatatttccaactcttcgagtacaaa |
218 |
Q |
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| T |
37605549 |
cacacaaattcatcatgcactccatcctctgatatttgcaaacataaacattatttttctgctagtatcgattcaatatttccaactcttcgagtacaaa |
37605648 |
T |
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| Q |
219 |
ttaattttaac |
229 |
Q |
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||||||||||| |
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| T |
37605649 |
ttaattttaac |
37605659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 37599854 - 37599965
Alignment:
| Q |
52 |
tttgatgcacaactatcattcacaggcatttaccttgataattgcccaaaatggcactgcacaaacaca--cacaaattcatcatgcactccatcctctg |
149 |
Q |
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|||||||||||| ||||| | | |||||||| |||||||| |||||||||||| |||| | ||||| ||||||||||||||| ||||||||||||| |
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| T |
37599854 |
tttgatgcacaagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaattcatcatgtactccatcctctg |
37599953 |
T |
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| Q |
150 |
atatttgcaaac |
161 |
Q |
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|||||||||||| |
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| T |
37599954 |
atatttgcaaac |
37599965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 37599254 - 37599289
Alignment:
| Q |
19 |
agacaaatacaaattcaaaagcatctgaactttttt |
54 |
Q |
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| T |
37599254 |
agacaaatacaaattcaaaagcatctgaactttttt |
37599289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 34263904 - 34263793
Alignment:
| Q |
52 |
tttgatgcacaactatcattcacaggcatttaccttgataattgcccaaaatggcactgcacaaacac--acacaaattcatcatgcactccatcctctg |
149 |
Q |
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||||||||||||| ||||||| | |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| ||| | ||||||| |
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| T |
34263904 |
tttgatgcacaacagtcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgtacttcgtcctctg |
34263805 |
T |
|
| Q |
150 |
atatttgcaaac |
161 |
Q |
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|||||||||||| |
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| T |
34263804 |
atatttgcaaac |
34263793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 35622808 - 35622711
Alignment:
| Q |
66 |
atcattcacaggcatttaccttgataattgcccaaaatggcactgcacaaacac--acacaaattcatcatgcactccatcctctgatatttgcaaac |
161 |
Q |
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|||||||| | |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |
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| T |
35622808 |
atcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
35622711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 14542906 - 14542970
Alignment:
| Q |
52 |
tttgatgcacaactatcattcacaggcatttaccttgataattgcccaaaatggcactgcacaaa |
116 |
Q |
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|
||||||||||||| |||||||| | |||||||| |||||||| ||||||||||||||||||||| |
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| T |
14542906 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaa |
14542970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 14580681 - 14580617
Alignment:
| Q |
52 |
tttgatgcacaactatcattcacaggcatttaccttgataattgcccaaaatggcactgcacaaa |
116 |
Q |
| |
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||||||||||||| |||||||| | |||||||| |||||||| ||||||||||||||||||||| |
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| T |
14580681 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaa |
14580617 |
T |
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