View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17034_low_40 (Length: 265)
Name: NF17034_low_40
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 51417698 - 51417945
Alignment:
| Q |
1 |
cagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttctttataccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51417698 |
cagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttctttataccagt |
51417797 |
T |
|
| Q |
101 |
ttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51417798 |
ttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaa |
51417897 |
T |
|
| Q |
201 |
attaattaattaaaaggagttccaataacattgaaagaatggaaaaag |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51417898 |
attaattaattaaaaggagttccaataacatagaaagaatggaaaaag |
51417945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 29323357 - 29323596
Alignment:
| Q |
1 |
cagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttctttataccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
29323357 |
cagagataacaaagtctccacccctttttggtgtgtgaagtcaatttcaatcgaatcattttactaacttttaattgctgataagtttctttataccact |
29323456 |
T |
|
| Q |
101 |
ttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcatgccaaagaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29323457 |
ttgaactctttagcaccaagacagaacttgttcaaggacacatttaattaaattg--tcaactaacgaaaattaac------aaagcatgccaaagaaaa |
29323548 |
T |
|
| Q |
201 |
attaattaattaaaaggagttccaataacattgaaagaatggaaaaag |
248 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29323549 |
ataaattaattaaaaggagttccaataacatagaaagaaaggaaaaag |
29323596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University