View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_43 (Length: 249)
Name: NF17034_low_43
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 11646179 - 11645941
Alignment:
| Q |
23 |
gtcctcatgagcttagcttagcaaggacggtgtataatatatgtaaggtcggggttgaaacttcgtccaccaccaacnnnnnnnnnnnnnnnnnnncaat |
122 |
Q |
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| T |
11646179 |
gtcctcatgagcttagcttagcaaggacggtgtataatatatgtaaggtcggggttgaaacttcgtccaccaccaacaaaaaaaaatggaaaaaaacaac |
11646080 |
T |
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| Q |
123 |
tcattttcataaaccatttgatcttggaa------------------ctcattcatctaacgaatttactctaagattactgccaatgaaaaataaagag |
204 |
Q |
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| T |
11646079 |
tcattttcataaaccatttgatcttggaacaccgtttgttcttggaactcattcatctaacgaatttactctaagattactgccaatgaaaaataaagag |
11645980 |
T |
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| Q |
205 |
gccacaaaatcaaaatctcatattcaattcattgtttta |
243 |
Q |
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| T |
11645979 |
gccacaaaatcaaaatctcatattcaattcattgtttta |
11645941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 5145109 - 5145057
Alignment:
| Q |
45 |
aaggacggtgtataatatatgtaaggtc-ggggttgaaacttcgtccaccacc |
96 |
Q |
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| T |
5145109 |
aaggacggtgtataatatatgtaaggtctggggttgaaacctcggtcaccacc |
5145057 |
T |
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