View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17034_low_47 (Length: 237)

Name: NF17034_low_47
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17034_low_47
NF17034_low_47
[»] chr4 (30 HSPs)
chr4 (42-237)||(8139782-8139977)
chr4 (16-179)||(15049096-15049258)
chr4 (16-179)||(15105166-15105328)
chr4 (119-179)||(7613098-7613158)
chr4 (119-179)||(20316834-20316894)
chr4 (119-178)||(1832589-1832648)
chr4 (42-179)||(9263934-9264074)
chr4 (121-179)||(5529336-5529394)
chr4 (125-178)||(19547734-19547787)
chr4 (119-179)||(10087833-10087893)
chr4 (123-178)||(4214570-4214625)
chr4 (42-179)||(11520069-11520209)
chr4 (56-179)||(10782918-10783041)
chr4 (119-179)||(13588221-13588281)
chr4 (121-179)||(9053337-9053395)
chr4 (129-179)||(12216154-12216204)
chr4 (121-179)||(23975193-23975251)
chr4 (129-179)||(28572460-28572510)
chr4 (130-179)||(18746354-18746403)
chr4 (123-179)||(12838830-12838885)
chr4 (119-179)||(17661337-17661396)
chr4 (119-179)||(18448089-18448148)
chr4 (123-179)||(23083012-23083068)
chr4 (139-178)||(29245086-29245125)
chr4 (119-169)||(17380389-17380439)
chr4 (16-52)||(8139981-8140017)
chr4 (125-177)||(20314799-20314851)
chr4 (129-177)||(48747700-48747748)
chr4 (125-164)||(17263884-17263923)
chr4 (136-179)||(30242490-30242533)
[»] chr1 (12 HSPs)
chr1 (51-179)||(27910248-27910373)
chr1 (119-179)||(25264860-25264920)
chr1 (119-179)||(20033791-20033851)
chr1 (119-179)||(1675634-1675694)
chr1 (123-179)||(17443247-17443303)
chr1 (123-179)||(16114123-16114179)
chr1 (135-179)||(34104265-34104309)
chr1 (136-179)||(10063683-10063726)
chr1 (119-178)||(26580984-26581043)
chr1 (129-179)||(8746845-8746895)
chr1 (134-179)||(25425697-25425742)
chr1 (135-179)||(36977224-36977267)
[»] chr7 (38 HSPs)
chr7 (119-179)||(23007980-23008040)
chr7 (43-174)||(8038419-8038549)
chr7 (120-179)||(24751895-24751954)
chr7 (119-179)||(10991618-10991678)
chr7 (118-179)||(21884271-21884332)
chr7 (62-179)||(21911535-21911652)
chr7 (119-179)||(9721954-9722014)
chr7 (135-179)||(9891198-9891242)
chr7 (123-179)||(18467689-18467745)
chr7 (121-179)||(1732026-1732084)
chr7 (121-179)||(9917534-9917592)
chr7 (121-179)||(9925446-9925504)
chr7 (122-179)||(26133866-26133921)
chr7 (42-175)||(4900946-4901078)
chr7 (43-179)||(8158356-8158491)
chr7 (127-179)||(9288292-9288344)
chr7 (127-179)||(9298084-9298136)
chr7 (135-179)||(18448966-18449010)
chr7 (135-173)||(1279889-1279927)
chr7 (129-179)||(9863412-9863462)
chr7 (125-179)||(10938636-10938690)
chr7 (129-179)||(12864565-12864615)
chr7 (135-172)||(10414751-10414788)
chr7 (119-179)||(1728536-1728595)
chr7 (127-179)||(5484992-5485044)
chr7 (123-179)||(9501341-9501397)
chr7 (123-179)||(22468351-22468407)
chr7 (125-179)||(7398662-7398717)
chr7 (125-179)||(2454722-2454776)
chr7 (121-179)||(2505203-2505261)
chr7 (121-179)||(15611686-15611744)
chr7 (125-179)||(21502235-21502288)
chr7 (123-179)||(6040004-6040061)
chr7 (119-179)||(16224719-16224779)
chr7 (119-176)||(20175403-20175460)
chr7 (123-179)||(5221690-5221746)
chr7 (16-52)||(10414619-10414655)
chr7 (129-169)||(13708520-13708560)
[»] chr6 (17 HSPs)
chr6 (59-179)||(10821577-10821696)
chr6 (42-179)||(9387026-9387162)
chr6 (42-179)||(10504550-10504686)
chr6 (42-179)||(32759409-32759545)
chr6 (120-176)||(26297430-26297486)
chr6 (24-179)||(34479493-34479647)
chr6 (121-179)||(14726520-14726578)
chr6 (122-179)||(26214522-26214579)
chr6 (119-179)||(14882314-14882374)
chr6 (125-179)||(3357532-3357585)
chr6 (121-174)||(17768933-17768986)
chr6 (130-177)||(16167171-16167218)
chr6 (121-168)||(21080380-21080427)
chr6 (121-179)||(21061044-21061102)
chr6 (135-179)||(15613297-15613341)
chr6 (119-179)||(22537588-22537648)
chr6 (143-179)||(24654589-24654625)
[»] chr3 (16 HSPs)
chr3 (119-179)||(51119154-51119214)
chr3 (123-179)||(20886193-20886249)
chr3 (119-179)||(21019017-21019077)
chr3 (93-178)||(23055225-23055314)
chr3 (119-179)||(18473661-18473721)
chr3 (123-179)||(26092266-26092322)
chr3 (123-179)||(20338947-20339003)
chr3 (135-179)||(28369482-28369526)
chr3 (135-179)||(28377300-28377344)
chr3 (135-179)||(28385122-28385166)
chr3 (120-179)||(10950578-10950637)
chr3 (129-176)||(27820152-27820199)
chr3 (136-177)||(21084196-21084237)
chr3 (146-179)||(32198041-32198074)
chr3 (123-179)||(820529-820584)
chr3 (123-179)||(32466087-32466143)
[»] chr2 (19 HSPs)
chr2 (119-179)||(12556804-12556864)
chr2 (121-179)||(26292105-26292163)
chr2 (121-179)||(26652338-26652396)
chr2 (119-179)||(34368720-34368780)
chr2 (119-179)||(8502149-8502209)
chr2 (119-179)||(30682870-30682930)
chr2 (129-179)||(25937961-25938011)
chr2 (135-179)||(13517054-13517098)
chr2 (119-179)||(31427148-31427208)
chr2 (119-179)||(31433488-31433548)
chr2 (120-179)||(8446187-8446246)
chr2 (121-176)||(17181307-17181362)
chr2 (119-179)||(27870653-27870713)
chr2 (119-179)||(41789739-41789799)
chr2 (135-179)||(7707286-7707330)
chr2 (120-177)||(18923072-18923129)
chr2 (129-170)||(29985715-29985756)
chr2 (123-179)||(24089894-24089949)
chr2 (123-179)||(27908144-27908199)
[»] chr5 (21 HSPs)
chr5 (120-179)||(23013727-23013786)
chr5 (119-179)||(13692972-13693031)
chr5 (135-179)||(28254214-28254258)
chr5 (42-179)||(19762193-19762331)
chr5 (95-175)||(111672-111752)
chr5 (120-179)||(25921213-25921272)
chr5 (119-175)||(20533159-20533215)
chr5 (135-179)||(23032069-23032113)
chr5 (123-179)||(24188279-24188335)
chr5 (121-179)||(18227035-18227091)
chr5 (120-179)||(20103579-20103638)
chr5 (125-179)||(24261405-24261460)
chr5 (121-179)||(17831062-17831119)
chr5 (123-169)||(26252854-26252900)
chr5 (123-179)||(17336932-17336988)
chr5 (135-179)||(19964310-19964354)
chr5 (140-179)||(18751380-18751420)
chr5 (135-179)||(22920335-22920379)
chr5 (123-179)||(23266152-23266208)
chr5 (135-179)||(26253890-26253934)
chr5 (135-179)||(26308560-26308604)
[»] chr8 (13 HSPs)
chr8 (42-179)||(24114822-24114958)
chr8 (119-179)||(26009025-26009085)
chr8 (119-179)||(28318326-28318386)
chr8 (130-179)||(25597098-25597147)
chr8 (125-177)||(15059169-15059221)
chr8 (119-171)||(17973141-17973193)
chr8 (119-178)||(18829529-18829588)
chr8 (59-163)||(24851499-24851602)
chr8 (119-176)||(12656922-12656979)
chr8 (119-178)||(26614394-26614453)
chr8 (123-177)||(5856118-5856172)
chr8 (129-175)||(12565661-12565707)
chr8 (123-179)||(19265132-19265187)
[»] scaffold0394 (1 HSPs)
scaffold0394 (16-179)||(10645-10806)
[»] scaffold0085 (1 HSPs)
scaffold0085 (125-178)||(23388-23441)
[»] scaffold0086 (1 HSPs)
scaffold0086 (128-179)||(8768-8819)
[»] scaffold0136 (1 HSPs)
scaffold0136 (125-179)||(14512-14566)
[»] scaffold0340 (1 HSPs)
scaffold0340 (135-179)||(16329-16373)
[»] scaffold0019 (1 HSPs)
scaffold0019 (125-179)||(27498-27552)
[»] scaffold1156 (1 HSPs)
scaffold1156 (123-179)||(617-672)
[»] scaffold0360 (1 HSPs)
scaffold0360 (123-175)||(17171-17223)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 237
Target Start/End: Complemental strand, 8139977 - 8139782
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttattt 141  Q
    ||||||||||| | |||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||    
T  8139977 ctcattcataatgaagtggttcaagaggaaagcaaactctaggagcttcctagggaggagtatctctccttatgtcgagtctctagggtatgttttattt 8139878  T
Q  142 cttttgtaatttatctttagttaccatgagtaactaaannnnnnnaagcaaataaagagacaatgacatgactcacttaatctctcatttaatccc 237  Q
    |||||||||||| |||||| ||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8139877 cttttgtaatttgtctttaattatcatgagtaactaaatttttttaagcaaataaagagacaatgacatgactcacttaatctctcatttaatccc 8139782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 15049096 - 15049258
Alignment:
Q  16 aaactctccctataaataccattccactcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatg 115  Q
    |||| |||| ||||||||||| ||| ||||||||||||  |||||||||||| ||| | |||| |||||| |||| || |||||||| |||||||| |      
T  15049096 aaacgctccttataaataccactcctctcattcataacaaagtggttcaagatgaaggcaaacactaggatcttc-aagggaggagtttctctcctcact 15049194  T
Q  116 tcgagtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
     | |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15049195 ccaagtctctaaggtatgctttatttcttttgtaatttatctttagttaccatgagtaactaaa 15049258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 15105328 - 15105166
Alignment:
Q  16 aaactctccctataaataccattccactcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatg 115  Q
    |||| |||| ||||||||||| ||| ||||||||||||  |||||||||||| ||| | |||| |||||| |||| || |||||||| |||||||| |      
T  15105328 aaacgctccttataaataccactcctctcattcataacaaagtggttcaagatgaaggcaaacactaggatcttc-aagggaggagtttctctcctcact 15105230  T
Q  116 tcgagtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
     | |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15105229 ccaagtctctaaggtatgctttatttcttttgtaatttatctttagttaccatgagtaactaaa 15105166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 7613158 - 7613098
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  7613158 agtctctagggtatgttttatttcatttgtaatttatatttagttaccatgagtaactaaa 7613098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 20316834 - 20316894
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  20316834 agtctctagggtatcttttatttcttttgtaatttttctttagttaccatgagtaactaaa 20316894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 1832589 - 1832648
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  1832589 agtctctagggtatgttttatttcttttgtaatttgtctttagttaccatgaataactaa 1832648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 9263934 - 9264074
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctc--cttatgtcgagt--ctctagggtatggttt 137  Q
    |||||||| |||| |||||||||||||||| | |||| |||||||||||||  |||| ||| ||||||  || |   | |||  ||||| |||||| |||    
T  9263934 ctcattcagaacgaagtggttcaagaggaaggcaaacactaggagcttccag-ggagtagtttctctctcctcactccaagtttctctatggtatgtttt 9264032  T
Q  138 atttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  9264033 atttcttttgtaatttgtctttagttaccatgagtaactaaa 9264074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 5529394 - 5529336
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  5529394 tctctagggtatgttttatttcttttttaatttgtctttagttaccatgagtaactaaa 5529336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 19547734 - 19547787
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  19547734 tagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaa 19547787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 10087893 - 10087833
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||    
T  10087893 agtctctatggtatgttttatttcttttgtaatttgtctttagttaccataagtaactaaa 10087833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 4214570 - 4214625
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  4214570 tctagggtatgttttatttcttttgtaatttatatttagttcccatgagtaactaa 4214625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 11520069 - 11520209
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtc-----gagtctctagggtatggtt 136  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||||||  || ||||| |||||| | ||| |     |  |||||| |||||| ||    
T  11520069 ctcattcataacgaagtggttcaagaggaaggtaaacactaggagcttccagggg-ggagtttctctc-tcatgactccaagtttctctaaggtatgttt 11520166  T
Q  137 tatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||    
T  11520167 tatttcttttgtaatttgtctttagttaccatgaataattaaa 11520209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 10783041 - 10782918
Alignment:
Q  56 agtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctc-tagggtatggtttatttcttttgtaattta 154  Q
    |||||||||||||||| |||| | ||||||||||| ||||||||||| |||||||| |   | ||| |  || |||||| ||||||| |||||||||||     
T  10783041 agtggttcaagaggaaggaaagcactaggagcttc-aaaggaggagtctctctcctcactccaagttttatatggtatgttttatttattttgtaatttt 10782943  T
Q  155 tctttagttaccatgagtaactaaa 179  Q
    ||||||||||| |||| ||||||||    
T  10782942 tctttagttactatgattaactaaa 10782918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 13588281 - 13588221
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||  |||||||  |||||| |||||||||||||||||||||||||||||    
T  13588281 agtctctagggtatattttatttactttgtactttatctttagttaccatgagtaactaaa 13588221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 9053395 - 9053337
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||    
T  9053395 tctctcgggtatgttttatgtcttttgtaatttatctttagttaccattaataactaaa 9053337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 12216154 - 12216204
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||||    
T  12216154 gtatgttttatttcttttgtaattcgtctttagttaccatgagtaactaaa 12216204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 23975251 - 23975193
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||    
T  23975251 tctcaagggtatgttttatttcttttgtaatttgtctttagttgccatgtgtaactaaa 23975193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 28572510 - 28572460
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  28572510 gtatgttttatttcttttgtaatttgtctttagttaccatgagtaattaaa 28572460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 18746354 - 18746403
Alignment:
Q  130 tatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  18746354 tatgttttatttcttctgtaatttgtctttagttaccatgagtaactaaa 18746403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 12838830 - 12838885
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  12838830 tctagggtatgttttatttcttt-gtaatttgtctttagttaccatgagtcactaaa 12838885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 17661396 - 17661337
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||| |||||||||||||| |||| |||||||||| ||||||||||||||    
T  17661396 agtctctagtgtatgttttatttcttttgtcatttgtctttagtta-catgagtaactaaa 17661337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 18448089 - 18448148
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||  |||||||||||||| |||| |||||||||||||||||||| ||||    
T  18448089 agtctctagggtatt-tttatttcttttgttatttgtctttagttaccatgagtaattaaa 18448148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 23083068 - 23083012
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| ||| ||||||||||||||||||| | ||||||||||||||| |||||||    
T  23083068 tctagggaatgttttatttcttttgtaatttgtttttagttaccatgagaaactaaa 23083012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 29245086 - 29245125
Alignment:
Q  139 tttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29245086 tttcttttgtaatttatatttagttaccatgagtaactaa 29245125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 17380439 - 17380389
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatg 169  Q
    ||||||||||||||| |||| |||||||||||||||| | |||||||||||    
T  17380439 agtctctagggtatgttttaattcttttgtaatttatatgtagttaccatg 17380389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 8140017 - 8139981
Alignment:
Q  16 aaactctccctataaataccattccactcattcataa 52  Q
    ||||| |||||||||||||||||||||||||||||||    
T  8140017 aaactgtccctataaataccattccactcattcataa 8139981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 20314799 - 20314851
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    ||||||| | ||||||||||||||||||| |||||||||| ||||| ||||||    
T  20314799 tagggtaggttttatttcttttgtaatttgtctttagttaacatgaataacta 20314851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 48747748 - 48747700
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    ||||| ||||||||||||||||||||| |||||||| ||| ||||||||    
T  48747748 gtatgttttatttcttttgtaatttatttttagttatcataagtaacta 48747700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 17263923 - 17263884
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagtta 164  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  17263923 taggttatgttttatttcttttgtaatttatctttagtta 17263884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 30242533 - 30242490
Alignment:
Q  136 ttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||    
T  30242533 ttatttcttttgtaatttatttttaggtactatgagtaactaaa 30242490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 27910373 - 27910248
Alignment:
Q  51 aacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttatttcttttgtaa 150  Q
    |||| |||||||||||||||| | |||| || |||||||| || ||||||||  ||||||| |  |  |||||||| |||||| ||||||||||||||||    
T  27910373 aacgaagtggttcaagaggaaggcaaacacttggagcttc-aagggaggagt--ctctcctcactttaagtctctaaggtatgttttatttcttttgtaa 27910277  T
Q  151 tttatctttagttaccatgagtaactaaa 179  Q
    ||| |||||||||||||||||||||||||    
T  27910276 tttgtctttagttaccatgagtaactaaa 27910248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 25264920 - 25264860
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  25264920 agtctctaaggtatgttttatttcttttgtaaattatctttagttaccatgagtaactaaa 25264860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 20033791 - 20033851
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||    
T  20033791 agtctctagggtatgttttatttcttatgtaatttgtttttagttaccatgagtaactaaa 20033851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 1675634 - 1675694
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||| |||||    
T  1675634 agtctctatggtatgttttatttcttttgtaatttgtcttttgttaccatgagtagctaaa 1675694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 17443303 - 17443247
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||    
T  17443303 tctagggtatgttttatttcttttgtaatttgtctttagtcaccatgggtaactaaa 17443247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 16114179 - 16114123
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||||||||||||||| | |||||||||||||  ||||||||    
T  16114179 tctagggtatgctttatttcttttgtaatttgtttttagttaccatggataactaaa 16114123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 34104309 - 34104265
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  34104309 tttatttcttttgtaatttgtctttagttaccatgaataactaaa 34104265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 10063683 - 10063726
Alignment:
Q  136 ttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  10063683 ttatttcttttgtaatttgtctttagttaccatgaataactaaa 10063726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 26581043 - 26580984
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||||||||| ||| ||| |||||| |||| |||||||||| |||||||||||||    
T  26581043 agtctctagggtatgttttgtttgttttgttatttgtctttagttatcatgagtaactaa 26580984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 8746845 - 8746895
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||| ||||    
T  8746845 gtatgttttatttcttttgtaatttatctttgattaccatgagtaattaaa 8746895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 25425742 - 25425697
Alignment:
Q  134 gtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||    
T  25425742 gtttatttcttttgtaatttgtctttggttacaatgagtaactaaa 25425697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 36977267 - 36977224
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||    
T  36977267 tttatttcttt-gtaatttgtctttagttaccatgcgtaactaaa 36977224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 23008040 - 23007980
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  23008040 agtctctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 23007980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 8038549 - 8038419
Alignment:
Q  43 tcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttatttc 142  Q
    ||||||| |||| |||||||||||||||| |||||| ||||||||||  || ||  |||| |||||| | ||  | ||||| |||||| || | ||||||    
T  8038549 tcattcagaacgaagtggttcaagaggaaggaaaacactaggagcttt-aagggttgagtctctctcgtcattccaagtctttagggtgtgttatatttc 8038451  T
Q  143 ttttgtaatttatctttagttaccatgagtaa 174  Q
    ||||||||||| ||||||||||||||||||||    
T  8038450 ttttgtaatttgtctttagttaccatgagtaa 8038419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 24751895 - 24751954
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  24751895 gtctctagggtatgttttatttcttttgtaatttttttttagttaccatgagtaactaaa 24751954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 10991618 - 10991678
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  10991618 agtcgctagggtatgttttatttcttttgtaatttgtctttaggtaccatgagtaactaaa 10991678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 21884271 - 21884332
Alignment:
Q  118 gagtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||| ||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||    
T  21884271 gagtctatagggtattttttgtttcttttgtaatttgtctttagttaccatgagtaactaaa 21884332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 21911535 - 21911652
Alignment:
Q  62 tcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttatttcttttgtaatttatctttag 161  Q
    |||||||||||| || |  || |||||||||| |||||||| |||| ||| |    |||||||| || |||  ||||||||||||||||||| |||||||    
T  21911535 tcaagaggaaagcaagcattaagagcttccaagggaggagtttctcacctcactctgagtctcttggatattttttatttcttttgtaatttttctttag 21911634  T
Q  162 ttaccatgagtaactaaa 179  Q
    ||||||||| ||||||||    
T  21911635 ttaccatgaataactaaa 21911652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 9722014 - 9721954
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||  |||||||  |||||| |||||||||||||||||||||||||||||    
T  9722014 agtctctagggtatattttatttactttgtactttatctttagttaccatgagtaactaaa 9721954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 9891242 - 9891198
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  9891242 tttatttcttttgtaatttgtctttagttaccatgagtaactaaa 9891198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 18467745 - 18467689
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||||    
T  18467745 tctagggtatgttttatttcttttgtaatttgtttttacttaccatgagtaactaaa 18467689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 1732084 - 1732026
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||  ||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  1732084 tctctaggtcatgttttatttcttttgtaatttgtctttagttatcatgagtaactaaa 1732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 9917592 - 9917534
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||||||    
T  9917592 tctctagggtatgttttattttttttgtaatttgtctttagttaccatgtgtgactaaa 9917534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 9925504 - 9925446
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||||||    
T  9925504 tctctagggtatgttttattttttttgtaatttgtctttagttaccatgtgtgactaaa 9925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 26133866 - 26133921
Alignment:
Q  122 ctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||    
T  26133866 ctctagggtatgttttatttcttttgtaatttgtc--tagttaccatgagtaactaaa 26133921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 4900946 - 4901078
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttattt 141  Q
    |||||||| |||| || |||||||||| || | || | ||||||||||| |||||||| || |||||||| |   | ||||||||||||||| |   |||    
T  4900946 ctcattcagaacgaagcggttcaagagaaaggcaagcactaggagcttc-aaaggaggtgtttctctcctcactccaagtctctagggtatgttaatttt 4901044  T
Q  142 cttttgtaatttatctttagttaccatgagtaac 175  Q
     ||||||||||| |||||||||| ||||||||||    
T  4901045 tttttgtaatttgtctttagttatcatgagtaac 4901078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 8158491 - 8158356
Alignment:
Q  43 tcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttatttc 142  Q
    |||||||||| | |||||||||||||||| | |||| ||||||||||| || |||| ||| | ||||   |  |  | ||||||||||||| |||| |||    
T  8158491 tcattcataatgaagtggttcaagaggaaggcaaacactaggagcttc-aagggagaagtctttctctacactttaaatctctagggtatgttttaattc 8158393  T
Q  143 ttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |  ||||| |||||||||||||||||||    
T  8158392 ttttgtaaatcgtctttggttaccatgagtaactaaa 8158356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9288344 - 9288292
Alignment:
Q  127 gggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| |||||||||||||||| |||| ||||||||||||| |||||||||    
T  9288344 gggtatgttttatttcttttgtaagttatttttagttaccatgggtaactaaa 9288292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9298136 - 9298084
Alignment:
Q  127 gggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| |||||||||||||||| |||| ||||||||||||| |||||||||    
T  9298136 gggtatgttttatttcttttgtaagttatttttagttaccatgggtaactaaa 9298084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 18449010 - 18448966
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  18449010 tttatttcttttgtaatttgtctttagttaccatgtgtaactaaa 18448966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 1279927 - 1279889
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagta 173  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  1279927 tttatttcttttgtaatttttctttagttaccatgagta 1279889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 9863412 - 9863462
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||| ||||||||||||||| |||||||||||||||| ||||||||    
T  9863412 gtatgttttttttcttttgtaatttgtctttagttaccatgattaactaaa 9863462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 10938690 - 10938636
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||| ||||||||||||||||||| |||||||||||| | ||||||||||    
T  10938690 taggttatgttttatttcttttgtaatttgtctttagttaccctaagtaactaaa 10938636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 12864615 - 12864565
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||| ||||||||||||||||| ||||||| |||||||||||||||    
T  12864615 gtatgttttgtttcttttgtaatttatatttagttgccatgagtaactaaa 12864565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 10414751 - 10414788
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagt 172  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10414751 tttatttcttttgtaatttgtctttagttaccatgagt 10414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 1728595 - 1728536
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| || |||||| ||||||||||||||||||| | |||||||| ||||||||||||||    
T  1728595 agtctttaaggtatgctttatttcttttgtaatttgt-tttagttatcatgagtaactaaa 1728536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5485044 - 5484992
Alignment:
Q  127 gggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| ||||||||||||||||||| | |||||||| |||| |||||||||    
T  5485044 gggtatgttttatttcttttgtaatttgtttttagttatcatgggtaactaaa 5484992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 9501397 - 9501341
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| || ||||||||||| |||||| ||||||||||||| |||| ||||    
T  9501397 tctagggtatgtttgatttcttttgtgatttatttttagttaccatgggtaattaaa 9501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 22468407 - 22468351
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||||| ||||||||||||||||||| | ||||||||||| | |||||||||    
T  22468407 tctaaggtatgttttatttcttttgtaatttgtttttagttaccaagggtaactaaa 22468351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 7398717 - 7398662
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttat-ctttagttaccatgagtaactaaa 179  Q
    ||||||| | ||||||||||||||||||  | ||||||||||||||||||||||||    
T  7398717 tagggtaagttttatttcttttgtaattagtgctttagttaccatgagtaactaaa 7398662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 2454776 - 2454722
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||| ||||||||||||||||| | |||||| |||||||||||| |||||    
T  2454776 taggctatgttttatttcttttgtaatatgtctttatttaccatgagtagctaaa 2454722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 2505261 - 2505203
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||| |||||| |||||||||||| |||||| ||||||||||  | |||||||||||    
T  2505261 tctctatggtatgttttatttcttttttaatttgtctttagttattacgagtaactaaa 2505203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 15611686 - 15611744
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| ||||| ||||||| ||||||||||| |||| |||| | |||||||||||||    
T  15611686 tctctagagtatgttttatttgttttgtaatttgtcttaagtttctatgagtaactaaa 15611744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 21502288 - 21502235
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||  |||||||||    
T  21502288 tagggtatg-tttatttcttttgtaatttgtttttagttaccattggtaactaaa 21502235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 6040004 - 6040061
Alignment:
Q  123 tctagggtatggtttatttcttttgt-aatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||  |||||||||||| | ||||| | |||||||||||||||||||||||    
T  6040004 tctagggtatattttatttctttttttaatttgtttttagttaccatgagtaactaaa 6040061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 16224719 - 16224779
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttat-ctttagttaccatgagtaactaaa 179  Q
    |||||||| |||||| |||||| |||||||||||| | |||||||||| |||||||||||||    
T  16224719 agtctctatggtatgttttatt-cttttgtaattttttctttagttactatgagtaactaaa 16224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 20175460 - 20175403
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaact 176  Q
    ||||||||||||| | ||||||| ||||  ||||| ||||||||||||||||| ||||    
T  20175460 agtctctagggtaggttttatttatttttaaatttctctttagttaccatgagaaact 20175403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 5221690 - 5221746
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| | | ||||||||||||||||| | ||| ||||||||| |||||||||    
T  5221690 tctagggtacgttctatttcttttgtaatttgttttttgttaccatgggtaactaaa 5221746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 10414619 - 10414655
Alignment:
Q  16 aaactctccctataaataccattccactcattcataa 52  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  10414619 aaactctccctataaataccactcctctcattcataa 10414655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 13708560 - 13708520
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatg 169  Q
    ||||| || |||||||||||||||| |||||||||||||||    
T  13708560 gtatgtttgatttcttttgtaatttgtctttagttaccatg 13708520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 10821696 - 10821577
Alignment:
Q  59 ggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttatttcttttgtaatttatctt 158  Q
    ||||||||||||| | |||| ||| ||||||  || |||||||| |||||||| ||    ||||||||||||||| ||||||||||||||||||| ||||    
T  10821696 ggttcaagaggaaggcaaacactaagagcttt-aagggaggagtctctctcctcattctaagtctctagggtatgttttatttcttttgtaatttgtctt 10821598  T
Q  159 tagttaccatgagtaactaaa 179  Q
    ||||||||| |||||||||||    
T  10821597 tagttaccaagagtaactaaa 10821577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 9387162 - 9387026
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttattt 141  Q
    |||||||| ||||||| ||||||||||||| | ||   ||||||||||| || |||||||| ||| |||  |     ||||||||||||||| |||||||    
T  9387162 ctcattcagaacgtagcggttcaagaggaaggcaagtactaggagcttc-aagggaggagtttctatccacactctaagtctctagggtatgttttattt 9387064  T
Q  142 cttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||| | ||||||||||| |||||||||||||    
T  9387063 cttttgtaatatgtctttagttacaatgagtaactaaa 9387026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 10504686 - 10504550
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttattt 141  Q
    |||||||| |||| || |||||||||| || | || | ||||||| ||| || |||||||| |||||| | |   | ||||||||| ||||| |||||||    
T  10504686 ctcattcagaacgaagcggttcaagagaaaggcaagcactaggagtttc-aagggaggagtttctctcatcactccaagtctctagagtatgttttattt 10504588  T
Q  142 cttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  10504587 cttttgtaatttatctttagttgccatgtgtaactaaa 10504550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 32759545 - 32759409
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttattt 141  Q
    ||||||||||||  || ||||||||||||| | || |  ||||||||||||  |||||||| |||||||| |   | |||||||| |||||| |||||||    
T  32759545 ctcattcataactaagcggttcaagaggaaggcaagcattaggagcttccag-ggaggagtttctctcctcactccaagtctctaaggtatgttttattt 32759447  T
Q  142 cttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| |||||||||||| || |||| ||||    
T  32759446 cttttgtaatttgtctttagttaccgtgtgtaagtaaa 32759409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 26297486 - 26297430
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaact 176  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  26297486 gtctctagagtatgttttatttcttttgtaatttatctttggttaccatgagtaact 26297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 34479647 - 34479493
Alignment:
Q  24 cctataaataccattccactcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtct 123  Q
    |||||||||||||  || |||||| | || | |||||||||||||||    || | ||||||||||| || |||||||| |||||||| |     ||| |    
T  34479647 cctataaataccaaacctctcatttaaaatgaagtggttcaagaggatgacaagcactaggagcttc-aagggaggagtctctctcctcactctaagttt 34479549  T
Q  124 ctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  34479548 ctagcgtatgctttatttcttttgtaatttgtctttagttaccatgagtaaataaa 34479493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 14726578 - 14726520
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  14726578 tctcttgggtatgttttatttcttttgtaatttgtttttagttaccatgagtaactaaa 14726520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 26214522 - 26214579
Alignment:
Q  122 ctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||    
T  26214522 ctctagggtatattttatttcttttgtaatttgtcttttgttaccatgagtaactaaa 26214579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 14882374 - 14882314
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||||||||    
T  14882374 agtctctagggtatgttttatttcttttagaatttgtctttagttaccatcagtaactaaa 14882314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 3357585 - 3357532
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||    
T  3357585 tagggtatgttttatttcttttgtaatttgtctttagtta-catgtgtaactaaa 3357532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 17768933 - 17768986
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaa 174  Q
    ||||||| || || |||||||| |||||||||||| ||||||||||||||||||    
T  17768933 tctctagagtgtgttttatttcctttgtaatttatttttagttaccatgagtaa 17768986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 16167218 - 16167171
Alignment:
Q  130 tatggtttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    |||| ||||||||||||||||||||||| || || |||||||||||||    
T  16167218 tatgttttatttcttttgtaatttatctctacttgccatgagtaacta 16167171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 21080380 - 21080427
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccat 168  Q
    |||||||| |||| ||||||| |||||||||||||| |||||||||||    
T  21080380 tctctaggctatgttttatttattttgtaatttatcattagttaccat 21080427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 21061044 - 21061102
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||| |||  |||||||||    
T  21061044 tctctaggctatgttttatttattttgtaatttatcattagttatcataggtaactaaa 21061102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 15613297 - 15613341
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||| |||||||||| ||||||| ||||||    
T  15613297 tttatttctttcgtaatttgtctttagttatcatgagttactaaa 15613341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 22537588 - 22537648
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| |||||||||  |||||||||||||||||| | |||  ||| ||||||||||||||    
T  22537588 agtctatagggtatgtattatttcttttgtaatttgtttttcattaacatgagtaactaaa 22537648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 24654589 - 24654625
Alignment:
Q  143 ttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  24654589 ttttgtaatttatttttggttaccatgagtaactaaa 24654625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 51119154 - 51119214
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  51119154 agtctctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 51119214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 20886249 - 20886193
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  20886249 tctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 20886193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 21019017 - 21019077
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||    
T  21019017 agtctctagggtatgttttatatcttttgtaatttgtctttggttaccatgagtaactaaa 21019077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 23055225 - 23055314
Alignment:
Q  93 aaggaggagtatctctccttatgtcgagtctctagggtatggttt----atttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    |||||||||| |||||||| |  |||||||||||| ||||  |||    |||||||||||||||| ||||||||||||||||||||||||    
T  23055225 aaggaggagtttctctcctcacttcgagtctctagagtattttttttttatttcttttgtaatttgtctttagttaccatgagtaactaa 23055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 18473661 - 18473721
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||| |||| |||||| ||  |||||||||||||||||||||    
T  18473661 agtctctagggtatgttttatttattttataatttctcaatagttaccatgagtaactaaa 18473721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 26092322 - 26092266
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||    
T  26092322 tctagggtatgttttatttattttgtaatttatatttaattaccatgagtaaataaa 26092266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 20338947 - 20339003
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| |||||| ||||||| |||||||||||  |||| |||||||||||||||||||    
T  20338947 tctatggtatgttttatttattttgtaatttgcctttggttaccatgagtaactaaa 20339003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 28369482 - 28369526
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||    
T  28369482 tttatttcttttataatttctctttagttaccatgggtaactaaa 28369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 28377300 - 28377344
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||    
T  28377300 tttatttcttttataatttctctttagttaccatgggtaactaaa 28377344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 28385122 - 28385166
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||    
T  28385122 tttatttcttttataatttctctttagttaccatgggtaactaaa 28385166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 10950637 - 10950578
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| ||| ||||| |||||||||||| |||||| |||||||||| ||| ||||||||||    
T  10950637 gtctttagagtatgttttatttcttttataatttgtctttagttaacataagtaactaaa 10950578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 27820152 - 27820199
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaact 176  Q
    ||||| ||||||||||||| ||||| ||||||||||||| ||||||||    
T  27820152 gtatgttttatttcttttgcaatttgtctttagttaccacgagtaact 27820199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 21084237 - 21084196
Alignment:
Q  136 ttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    |||||||||||||||||| |||||| ||||||||| ||||||    
T  21084237 ttatttcttttgtaatttgtctttaattaccatgactaacta 21084196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 32198074 - 32198041
Alignment:
Q  146 tgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |||||||||||||||||||||||||    
T  32198074 tgtaatttgtctttagttaccatgagtaactaaa 32198041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 820529 - 820584
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||| ||||||||||||||| | ||| ||||||||| |||||||||    
T  820529 tctagggtatgtttt-tttcttttgtaatttgtgtttggttaccatgggtaactaaa 820584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 32466087 - 32466143
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||| ||||||||||||||  ||| ||||||||| |||||| ||||||||    
T  32466087 tctagagtatgttttatttcttttgtggtttttctttagttgccatgaataactaaa 32466143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 12556804 - 12556864
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  12556804 agtctctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 12556864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 26292163 - 26292105
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  26292163 tctctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 26292105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 26652338 - 26652396
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  26652338 tctctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 26652396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 34368780 - 34368720
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  34368780 agtctctagggtatgttttatttcttttgtaatttgtttttagttaccatgagtaactaaa 34368720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 8502149 - 8502209
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||    
T  8502149 agtctctagggtatgttttatttcttttgtaatttgtctttagttaccatgggtagctaaa 8502209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 30682870 - 30682930
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||    
T  30682870 agtctctagggtgtgttttatttctattgtaatttgtctttagttaccatgagtaactaaa 30682930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 25938011 - 25937961
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  25938011 gtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 25937961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 13517054 - 13517098
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  13517054 tttatttcttttttaatttatctttagttaccatgagtaactaaa 13517098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 31427208 - 31427148
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||| ||||||| ||||||||||| ||||||||||| |||||||||||||    
T  31427208 agtctctagagtatgttttatttattttgtaatttgtctttagttactatgagtaactaaa 31427148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 31433548 - 31433488
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||||||  ||||||||    
T  31433548 agtctctagagtatgttttatttcttttgtaatttgtctttagttaccatggataactaaa 31433488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 8446187 - 8446246
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||| || |||||||||||||||| | ||||||||||||||| |||||||    
T  8446187 gtctctagggtatgtttaatttcttttgtaatttgtgtttagttaccatgagcaactaaa 8446246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 17181362 - 17181307
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaact 176  Q
    ||||||||||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  17181362 tctctagggtatgttatatttcttttataatttgtctttagttaccatgagtaact 17181307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 27870713 - 27870653
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||  |||||||||| |||||||| ||||| |||||||| ||||||||||    
T  27870713 agtctctagggtatattttatttcttatgtaatttgtctttggttaccattagtaactaaa 27870653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 41789739 - 41789799
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||| | ||| ||||||||||    
T  41789739 agtctctagagtatgttttatttcttttgtaatttgtctttagtcatcattagtaactaaa 41789799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 7707330 - 7707286
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||    
T  7707330 tttatttcttttgtattatatcttttgttaccatgagtaactaaa 7707286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 18923129 - 18923072
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    ||||||| || ||| |||||||||||| |||||| |||||||||  ||||||||||||    
T  18923129 gtctctatggcatgttttatttcttttataatttgtctttagttttcatgagtaacta 18923072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 29985715 - 29985756
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatga 170  Q
    ||||| |||||||||||||||||| || ||||||||||||||    
T  29985715 gtatgttttatttcttttgtaattgatttttagttaccatga 29985756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 24089894 - 24089949
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||| | ||||| ||||||||| ||||||||||||| |||||||||    
T  24089894 tctagggtatgtttt-tatctttagtaatttatttttagttaccatgtgtaactaaa 24089949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 27908144 - 27908199
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||| | ||||| ||||||| ||||||||||||||| |||||||||    
T  27908144 tctagggtatgtttt-tatctttagtaatttgtctttagttaccatgtgtaactaaa 27908199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 23013727 - 23013786
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  23013727 gtctctagggtatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 23013786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 13693031 - 13692972
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  13693031 agtctctagg-tatgttttatttcttttgtaatttgtctttagttaccatgagtaactaaa 13692972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 28254258 - 28254214
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28254258 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 28254214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 19762193 - 19762331
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgag---tctctagggtatggttta 138  Q
    |||||||| |||| ||  |||||||||||| | || | ||||||||||| || |||||||| |||||||| || || ||   | ||||||||||| ||||    
T  19762193 ctcattcagaacgaagcagttcaagaggaaggcaagcactaggagcttc-aagggaggagtctctctcctcat-tcaaggtttttctagggtatgtttta 19762290  T
Q  139 tttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| | ||||||||||||| |||||||||    
T  19762291 tttcttttgtaatttgtttttagttaccatgggtaactaaa 19762331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 111672 - 111752
Alignment:
Q  95 ggaggagtatctctccttatgtcgagtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaac 175  Q
    |||||||| |||||||| |  |||||||||||| ||||| ||||||||||||||||||| | |||| ||||||| ||||||    
T  111672 ggaggagtttctctcctcacttcgagtctctagtgtatgttttatttcttttgtaatttgtgtttaattaccataagtaac 111752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 25921213 - 25921272
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| ||||||  ||||| |||||||||||| |||||||||||||||||||||||||    
T  25921213 gtctctatggtatgtcttattacttttgtaatttgtctttagttaccatgagtaactaaa 25921272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 20533159 - 20533215
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaac 175  Q
    |||||||||| |||  ||||||||||||||||||| ||||| |||||||||||||||    
T  20533159 agtctctaggatatattttatttcttttgtaatttgtcttttgttaccatgagtaac 20533215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 23032113 - 23032069
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  23032113 tttatttcttttgtaatttgtctttagttacgatgagtaactaaa 23032069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 24188335 - 24188279
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||| ||||| ||||||||||||||||||| | ||||||||||||| |||||||||    
T  24188335 tctagagtatgttttatttcttttgtaatttgtttttagttaccatgggtaactaaa 24188279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 18227091 - 18227035
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| ||||| |||||||  |||||||||||||||||||||||||||||| |||||    
T  18227091 tctctagagtatgttttattt--tttgtaatttatctttagttaccatgagtagctaaa 18227035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 20103579 - 20103638
Alignment:
Q  120 gtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| ||||| ||||||  ||||||||||| | |||||||||||||||||||||||    
T  20103579 gtctctagagtatgttttattgattttgtaatttttttttagttaccatgagtaactaaa 20103638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 24261460 - 24261405
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatcttt-agttaccatgagtaactaaa 179  Q
    ||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24261460 tagggtaagttttatttcttttgtaatttattttttagttaccatgagtaactaaa 24261405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 17831119 - 17831062
Alignment:
Q  121 tctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||| ||||||||||||||    
T  17831119 tctctagggtatgttttatttgttt-gtaatttatccttagttatcatgagtaactaaa 17831062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 26252900 - 26252854
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatg 169  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  26252900 tctagggtatgttttatttcttttgtaatttgtctttaattaccatg 26252854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 17336932 - 17336988
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||| ||| ||||||||||||||||||| | |||||||||| ||| ||||||||    
T  17336932 tctagggcatgttttatttcttttgtaatttgtttttagttaccttgaataactaaa 17336988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 19964354 - 19964310
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||    
T  19964354 tttatttcttttgaaatttatctttaattacgatgagtaactaaa 19964310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 18751420 - 18751380
Alignment:
Q  140 ttcttttgtaattta-tctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  18751420 ttcttttgtaattttgtctttagttaccatgagtaactaaa 18751380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 22920379 - 22920335
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| || ||| | |||||||||||||||||||||||    
T  22920379 tttatttcttttatagtttgtttttagttaccatgagtaactaaa 22920335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 23266208 - 23266152
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||||||||||||||| ||| ||| ||||||  ||| |||||||||    
T  23266208 tctagggtatgttttatttcttttgtactttgtctatagttattatgtgtaactaaa 23266152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 26253890 - 26253934
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||| ||| | |||||||||||||||||||    
T  26253890 tttatttcttttgtattttgtctattgttaccatgagtaactaaa 26253934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 26308604 - 26308560
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||||| ||  |||||||||| ||||||||||    
T  26308604 tttatttcttttgtaatttgtcggtagttaccattagtaactaaa 26308560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 24114822 - 24114958
Alignment:
Q  42 ctcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatgtcgagtctctagggtatggtttattt 141  Q
    |||||||| |||| || ||||||||||||| | || | ||||||||||| |  |||||||| |||||||| |   | ||||| ||||||||| ||||| |    
T  24114822 ctcattcagaacgaagcggttcaagaggaaggcaaccactaggagcttctag-ggaggagtttctctcctcactccaagtctatagggtatgttttatgt 24114920  T
Q  142 cttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  24114921 cttttgtaatttgtctttagttatcatgagtaactaaa 24114958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 26009085 - 26009025
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||  ||||||||||||||    
T  26009085 agtctctagggtatgttttatttcttttgtaatttgtctttagttgacatgagtaactaaa 26009025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 28318386 - 28318326
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||    
T  28318386 agtctctatggtatgttttacttcttttgtaatttgtctttagttaccatgagtaactaaa 28318326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 25597098 - 25597147
Alignment:
Q  130 tatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  25597098 tatgttttatttcttttgtaatttttctttagttaccatgagtaactaaa 25597147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 15059169 - 15059221
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  15059169 tagggtatgttttatttctcttgtaatttgtctttagttaccatgagtaacta 15059221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 17973193 - 17973141
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgag 171  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  17973193 agtctttagggtatgttttatttcttttgtaatttttctttagttaccatgag 17973141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 18829588 - 18829529
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||| || ||||||||    
T  18829588 agtctctacggtatgttttatttcttttgtaatttatcttttgttaccttgcgtaactaa 18829529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 24851499 - 24851602
Alignment:
Q  59 ggttcaagaggaaagaaaaccctaggagcttccaaaggagg-agtatctctccttatgtcgagtctctagggtatggtttatttcttttgtaatttatct 157  Q
    ||||||||||||| | |||| |||| ||||||  ||||||| ||| ||||||||||    ||||||| |||||||| ||||||||||||||||||| |||    
T  24851499 ggttcaagaggaaggcaaacactagaagcttc--aaggagggagtttctctccttaccctgagtctccagggtatgttttatttcttttgtaatttttct 24851596  T
Q  158 ttagtt 163  Q
    ||||||    
T  24851597 ttagtt 24851602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 12656922 - 12656979
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaattt-atctttagttaccatgagtaact 176  Q
    ||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||||    
T  12656922 agtctctagggtacgctttatt-cttttgtaattttatctttagttaccatgagtaact 12656979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 26614394 - 26614453
Alignment:
Q  119 agtctctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||||||||| |||||||| ||| ||||||  ||||||||||||  |||||||||    
T  26614394 agtctctagggtatgttttatttcatttttaatttgactttagttaccacaagtaactaa 26614453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 5856172 - 5856118
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaacta 177  Q
    ||||| ||||| ||||| ||||||||||  | |||||||||||||||||||||||    
T  5856172 tctagtgtatgttttatatcttttgtaacatttctttagttaccatgagtaacta 5856118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 12565707 - 12565661
Alignment:
Q  129 gtatggtttatttcttttgtaatttatctttagttaccatgagtaac 175  Q
    ||||| ||||||||||||||||||| | |||||||| ||||||||||    
T  12565707 gtatgttttatttcttttgtaatttgtttttagttatcatgagtaac 12565661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 19265187 - 19265132
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||| | ||||||||||||| | ||||||||||||| |||||||||    
T  19265187 tctagggtatgtttt-tatcttttgtaatttgtttttagttaccatgtgtaactaaa 19265132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 10645 - 10806
Alignment:
Q  16 aaactctccctataaataccattccactcattcataacgtagtggttcaagaggaaagaaaaccctaggagcttccaaaggaggagtatctctccttatg 115  Q
    |||| |||| ||||||||||| |||  |||||||||||| |||||||||||| ||| | ||||  ||||| |||| || |||||||| |||||| | |      
T  10645 aaacactccttataaataccactcc--tcattcataacgaagtggttcaagaagaaggcaaacaataggatcttc-aagggaggagtttctctcgtcact 10741  T
Q  116 tcgagtctctagggtatggttt-atttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
     | |||||||| |||||| ||| |||||||||  ||||| |||||||||||||||||||||||||    
T  10742 ccaagtctctaaggtatgcttttatttctttttcaatttgtctttagttaccatgagtaactaaa 10806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 23441 - 23388
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaa 178  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  23441 tagggtatgttttatttcttttgtaatttgtctttagttaccatgagtgactaa 23388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 8819 - 8768
Alignment:
Q  128 ggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    |||||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  8819 ggtatgttttatttcttttgtaatttgtctttagttatcatgagtaactaaa 8768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 14512 - 14566
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||    
T  14512 tagggtatgttttatttctatcgtaatttgtctttagttaccatgagtaactaaa 14566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 16373 - 16329
Alignment:
Q  135 tttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  16373 tttatttcttttgtaatttgtctttagttagcatgagtaactaaa 16329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 27552 - 27498
Alignment:
Q  125 tagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||| ||||||||||| ||||||| |||||| |||||||  |||||||||    
T  27552 tagggtatgttttatttctttagtaatttgtctttaattaccatatgtaactaaa 27498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1156 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1156
Description:

Target: scaffold1156; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 672 - 617
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaactaaa 179  Q
    ||||||||||| ||| | ||||||||||||| | ||||||||||||| |||||||||    
T  672 tctagggtatgtttt-tatcttttgtaatttgtttttagttaccatgtgtaactaaa 617  T

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Target: scaffold0360 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 17171 - 17223
Alignment:
Q  123 tctagggtatggtttatttcttttgtaatttatctttagttaccatgagtaac 175  Q
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T  17171 tctagtgtatgttttatatcttttgtaacatttctttagttaccatgagtaac 17223  T

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