View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_49 (Length: 218)
Name: NF17034_low_49
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17584689 - 17584788
Alignment:
| Q |
1 |
agccgattagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaac |
100 |
Q |
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| T |
17584689 |
agccgattagcacaacggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagatgttgaatgtgccgcattgaagtaggaac |
17584788 |
T |
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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14742389 - 14742294
Alignment:
| Q |
1 |
agccgattagcacaatggttttcttccttcaagtatgacagaactgaacatgccaatataaagccaaaagacgttgaatgtgccgcattgaagtaggaac |
100 |
Q |
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| T |
14742389 |
agccgattagcacaacggttttcgtccttcaag----acagaactgaacatgccaatataaagccaaaagacattgaatgtgccgcattgaagtaggaac |
14742294 |
T |
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