View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_52 (Length: 203)
Name: NF17034_low_52
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 35542321 - 35542138
Alignment:
| Q |
1 |
cgtaatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaa |
100 |
Q |
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| T |
35542321 |
cgtaatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaa |
35542222 |
T |
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| Q |
101 |
tgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattt |
184 |
Q |
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| T |
35542221 |
tgaaacattgttaatagcccattttgtgaaactgccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattt |
35542138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 35509624 - 35509443
Alignment:
| Q |
3 |
taatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaatg |
102 |
Q |
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| T |
35509624 |
taatccattggaaatctctctggtggtggatttttatcaaatgtattttttaggttaaatttaattgatcctaagtaaggtgttgttggcaatgttaatg |
35509525 |
T |
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| Q |
103 |
aaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattt |
184 |
Q |
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| T |
35509524 |
aaacattgttaatagcccatttagtgaaactaccgattttgttttgtgtattgaggaggtgaatagtgcggtgtgaggattt |
35509443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 35527805 - 35527664
Alignment:
| Q |
19 |
tctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaatgaaacattgttaatagc |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
35527805 |
tctctggtggtggatttctatcaaatgtattgtttagtttatatttgattgctcctaagtacggtgttgttggcaatgttaatgaaacattgttaatagc |
35527706 |
T |
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| Q |
119 |
ccattttgtgaaactaccgattcggttttgtgtgttgaggag |
160 |
Q |
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| T |
35527705 |
ccatttaatgaaattacctattttgctttgtgtgttgaggag |
35527664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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