View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17034_low_9 (Length: 570)
Name: NF17034_low_9
Description: NF17034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17034_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 24300791 - 24300388
Alignment:
| Q |
11 |
cagagacatccagcggaagctcaccaaacatactattcttaaagcggtttagtgatccaacatctaccaccgatgggcaactcaagaaatcaacccatct |
110 |
Q |
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| T |
24300791 |
cagagacatccagccgaagctcaccaaacatactattcttaaagcggtttagtgatccaacatctaccaccgatgggcaactcaagaaatcaacccatct |
24300692 |
T |
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| Q |
111 |
ctaaagtgggctctaccctgtaggccgaggaaggctatttcaatgaatttcaatgacataataaattgatcaaaggaaggatacaattacaaaaaagttt |
210 |
Q |
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| T |
24300691 |
ctaaagtgggctttaccctgtaggccgaggaaggctatttcaatgaatttcaatgacataataaattgatcaaaggaaggatacaattacaaaa--gttt |
24300594 |
T |
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| Q |
211 |
ttataaaaccgccatttgaaattctttgtacttgtttccaagtccttttgaaatttgataaactttttcgccatttgaaattggtttcctccaaggatat |
310 |
Q |
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| T |
24300593 |
ttataaaaccgccatttgaaattctttgtacttgtttccaagtccttttgaaatttgaaaaactttttcgccatttgaaattggtttcctccaaggatat |
24300494 |
T |
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| Q |
311 |
actcccctttgttatagcatagactttattttttagttgggctttacctccttcaatgctaagaatttcttcttttatgtttctaaggagccatgaagtg |
410 |
Q |
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| T |
24300493 |
actcccctttgttatagcatagactttattttttagttgggctttaccaccttcaatgctaagaatttcttcttttatgtttctaaggagccatgaagtg |
24300394 |
T |
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| Q |
411 |
agaaat |
416 |
Q |
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| T |
24300393 |
agaaat |
24300388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 24241667 - 24241703
Alignment:
| Q |
33 |
accaaacatactattcttaaagcggtttagtgatcca |
69 |
Q |
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| T |
24241667 |
accaaacatactattcttaaagcggtttggtgatcca |
24241703 |
T |
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