View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17035_high_1 (Length: 472)
Name: NF17035_high_1
Description: NF17035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17035_high_1 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 202 - 472
Target Start/End: Original strand, 19474315 - 19474585
Alignment:
| Q |
202 |
ggttaaaattcaaagtactaggtgcaactcttttcctctagagggagaaatataaagtttaaaattacaagctgctatattattgaccttttcaaaaagt |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474315 |
ggttaaaattcaaaatactaggtgcaactcttttcctctagacggggaaatataaagtttaaaattacaagctgctatattattgaccttttcaaaaagt |
19474414 |
T |
|
| Q |
302 |
aatttatttaagttccaaacccgtgttattttagattctaataaatgtctctatctaaacctaaagtacattatttaaacaaagttagattctcaacttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474415 |
aatttatttaagttccaaacccgtgttattttagattctaataaatgtctctatcgaaacctaaagtacattatttaaacaaagttagattctcaacttc |
19474514 |
T |
|
| Q |
402 |
ttccctaactttttcatcaacatttcatggcttcctcatctcacaaactcttcatccttctctttataatc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19474515 |
ttccctaactttttcatcaacatttcatggcttcctcatctcacaaactcttcatccttctctttacaatc |
19474585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 19474127 - 19474296
Alignment:
| Q |
7 |
ggacatcatcagaaatctagaatgaccatcaatgccacgatgcagccaaacataaagataatccccttgaaagaacgataagtcggtaaagccaatagct |
106 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19474127 |
ggacataaacagaaatctagaatgaccatcaataccacgacgcagccaaacataaagatcatccccttgaaagaacgataagttggtaaagccaatagct |
19474226 |
T |
|
| Q |
107 |
taccaaagacgtgtcgcaaagttgtaatccttaggtaagtggaatgagatttaaactcatttaacatcta |
176 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474227 |
taccaaagacgtgtcgcaaagttgcaattatgaggtaagtggaatgagatttaaactcatttaacatcta |
19474296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 25785893 - 25785853
Alignment:
| Q |
31 |
accatcaatgccacgatgcagccaaacataaagataatccc |
71 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
25785893 |
accatcaataccacgacgcagccaaacataaagatcatccc |
25785853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 3941621 - 3941511
Alignment:
| Q |
17 |
agaaatctagaatgaccatcaatgccacgat-gcagccaaacataaagataatccccttgaaagaacgataagtcggtaaagccaatagcttaccaaaga |
115 |
Q |
| |
|
|||||||||||||| |||||||| |||| | ||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| || |||| || |
|
|
| T |
3941621 |
agaaatctagaatggccatcaataccacaaacgcagccaaacataaagataattcctttggaagaaagataagtcggtaaagccaatagtttgccaagga |
3941522 |
T |
|
| Q |
116 |
cgtgtcgcaaa |
126 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3941521 |
cgagtcgcaaa |
3941511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 33172781 - 33172855
Alignment:
| Q |
7 |
ggacatcatcagaaatctagaatgaccatcaatgccacgatgcagccaaacataaagataatccccttgaaagaa |
81 |
Q |
| |
|
|||||| | |||||||||| |||| |||||||| ||||| | |||| ||||||||||| ||||||||||||||| |
|
|
| T |
33172781 |
ggacataaacagaaatctaaaatggccatcaataccacgcggaagccgaacataaagatcatccccttgaaagaa |
33172855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University