View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17036_high_14 (Length: 261)
Name: NF17036_high_14
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_high_14 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 20321290 - 20321079
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20321290 |
gaataactttcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
20321191 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20321190 |
aaattcctaggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
20321091 |
T |
|
| Q |
201 |
aaataatatttt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20321090 |
aaataatatttt |
20321079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 34152035 - 34151824
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34152035 |
gaataactttcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
34151936 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34151935 |
aaattcctaggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
34151836 |
T |
|
| Q |
201 |
aaataatatttt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34151835 |
aaataatatttt |
34151824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 28983363 - 28983465
Alignment:
| Q |
110 |
ggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaaaaataatat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28983363 |
ggaatactaaaaatatgtttggtttaaaatgtataatcctaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaaaaataatat |
28983462 |
T |
|
| Q |
210 |
ttt |
212 |
Q |
| |
|
||| |
|
|
| T |
28983463 |
ttt |
28983465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 17653971 - 17653840
Alignment:
| Q |
48 |
tattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttctaaattcctgggaatactaaaaatatgtttgg-tttaaaatgtataat |
146 |
Q |
| |
|
|||||| ||||||| ||||||||| | |||||||||| ||||| ||||| ||||||| |||||||| |||||||||| ||| |||||||| |||||| |
|
|
| T |
17653971 |
tatttttaaaaagtatttggttactagtttgaattcccgagaactgtctttgtaaattcatgggaatagtaaaaatatgcttgactttaaaatatataat |
17653872 |
T |
|
| Q |
147 |
cccaggaataaatgtcaaaattattaaaatac |
178 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |
|
|
| T |
17653871 |
cccaataataaatgtctaaattattaaaatac |
17653840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28983320 - 28983368
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaata |
49 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28983320 |
gaataactttcccacgaatatattctttggaattatatttctaggaata |
28983368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 20267468 - 20267209
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20267468 |
gaataactttcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
20267369 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20267368 |
aaattcctgggaatactaaaaatatgtttgg-ttaaaatgtataatcccagaaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
20267270 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20267269 |
aaataatatttttcatg-ttattttcaatcaagcaaagtaaattatgtgagtcaacaaaggt |
20267209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 21054097 - 21053838
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21054097 |
gaataactttcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
21053998 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21053997 |
aaattcctgggaatactaaaaatatgtttgg-ttaaaatgtataatcccagaaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
21053899 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21053898 |
aaataatatttttcatg-ttattttcaatcaagcaaagtaaattatgtgagtcaacaaaggt |
21053838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 15363268 - 15363033
Alignment:
| Q |
26 |
cttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttctaaattcctgggaatactaaaaatat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363268 |
cttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttctaaattcctgggaatactaaaaatat |
15363169 |
T |
|
| Q |
126 |
gtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaaaaataata-ttttcatgnnnnnnnn |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15363168 |
gtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattaaatagatgaaaaataatatttttcatg-ttatttt |
15363070 |
T |
|
| Q |
225 |
naataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15363069 |
taatcaagcaaagtaaattatgtgagtcaacaaaggt |
15363033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18167163 - 18166908
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18167163 |
gaataacattcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
18167064 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18167063 |
aaattcctgggaatactagaaatat-----gtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
18166969 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18166968 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgtgagtcaacaaaggt |
18166908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18630717 - 18630462
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18630717 |
gaataacattcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
18630618 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18630617 |
aaattcctgggaatactagaaatat-----gtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
18630523 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18630522 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgtgagtcaacaaaggt |
18630462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 30199994 - 30200254
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30199994 |
gaataactttcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttagaactttctttct |
30200093 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
30200094 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatctcaggaataaatgtcaaaattattaaaatatccttttacattcaatagatgaa |
30200193 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30200194 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgtgagtcaacaaaggt |
30200254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27365721 - 27365932
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27365721 |
gaataacttttccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattctttggaactttctttct |
27365820 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27365821 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatctcaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
27365920 |
T |
|
| Q |
201 |
aaataatatttt |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27365921 |
aaataatatttt |
27365932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 62 - 261
Target Start/End: Original strand, 45112488 - 45112688
Alignment:
| Q |
62 |
gtttggttaccaatttgaattccttggaactttctttctaaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45112488 |
gtttggttaccaatttgaattccttggaactttctttctaaattactaagaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgt |
45112587 |
T |
|
| Q |
162 |
caaaattattaaaataccgttttacattcaatagatgaaaaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaagg |
260 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
45112588 |
caaaattattaaaatacccttttacattcaatagatgaaaaataatatttttcatgttatttttaatctaagcaaagtaaattatgtgagtcaacaaagg |
45112687 |
T |
|
| Q |
261 |
t |
261 |
Q |
| |
|
| |
|
|
| T |
45112688 |
t |
45112688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 7955980 - 7955720
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7955980 |
gaataattttcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
7955881 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
7955880 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattaaattgatgaa |
7955781 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
7955780 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgcgagtcaacaaaggt |
7955720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 1593234 - 1593117
Alignment:
| Q |
144 |
aatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaaaaataatattttcatgnnnnnnnnnaataaagcaaagtaaatt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
1593234 |
aatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatcaaaaataatatttttcacgttatttttaatcaagcaaagtaaatt |
1593135 |
T |
|
| Q |
244 |
atgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1593134 |
atgtgagtcaacaaaggt |
1593117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 12336612 - 12336352
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12336612 |
gaataattttcccaggaatatatttcttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaatttcttggaactttctttct |
12336513 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
12336512 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattaaatagatgaa |
12336413 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12336412 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgtgagtcaacaaaggt |
12336352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 603748 - 603993
Alignment:
| Q |
16 |
gaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttctaaattcctgggaata |
115 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
603748 |
gaatatattctttggaattatatttttaggaatatttttaaaaagtgtttggttaccaatttgaattctttggaactttctttctaaatttttgggaata |
603847 |
T |
|
| Q |
116 |
ctaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaaaaataata-ttttca |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
603848 |
ctaaaaatatgttttatttaaaatgtataatcccaggaataaatgtcaaaattattaatataccctttgacattcaatagatgaaaaataatatttttca |
603947 |
T |
|
| Q |
215 |
tgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
603948 |
tg-ttatttttaatcaagcaaagtaaattatgcgagtcaacaaaggt |
603993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 47024536 - 47024281
Alignment:
| Q |
2 |
aataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttcta |
101 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47024536 |
aataactttttcaggaatatattccttggaattatatttctatgaatattttaaaaaagtgtttggttaccaatttgaatttcttggaactttctttcta |
47024437 |
T |
|
| Q |
102 |
aattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaaa |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47024436 |
aattcttgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaaa |
47024337 |
T |
|
| Q |
202 |
aataatattttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaa |
258 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47024336 |
aatagtattttcatg-ttttttttaataaagcaaagtaaattatgtgagtcaacaaa |
47024281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 21867462 - 21867717
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21867462 |
gaataacattcccaggaatatattccttggaattatatttctaggaatatttttaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
21867561 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21867562 |
aaattcctggaaatactaaaaatat-----gtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
21867656 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21867657 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgtgagtcaacaaaggt |
21867717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 34917983 - 34917724
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34917983 |
gaataacttttccaggaatatattcattggaattatattcataggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
34917884 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34917883 |
aaattcctgggaata-ttaaaatatgtttggtttaaaatgtataatcccagaaataaatgtcaaaattattaaaatacctttttacattcaatagatgaa |
34917785 |
T |
|
| Q |
201 |
aaataatattttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34917784 |
aaataatattttttatgttattttcaatcaagcaaagtaaattatgtgagtcaacaaaggt |
34917724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 34025625 - 34025370
Alignment:
| Q |
1 |
gaataactttcccaagaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttaccaatttgaattccttggaactttctttct |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34025625 |
gaataacattcccaggaatatattccttggaattatattcctaggaatattttaaaaaagtgtttggttatcaatttgaattccttggaactttctttct |
34025526 |
T |
|
| Q |
101 |
aaattcctgggaatactaaaaatatgtttggtttaaaatgtataatcccaggaataaatgtcaaaattattaaaataccgttttacattcaatagatgaa |
200 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34025525 |
aaattcttggtaatactaaaaatat-----gtttaaaatgtataatcccaggaataaatgtcaaaattattaaaatacccttttacattcaatagatgaa |
34025431 |
T |
|
| Q |
201 |
aaataata-ttttcatgnnnnnnnnnaataaagcaaagtaaattatgtgagtcaacaaaggt |
261 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34025430 |
aaataatatttttcatg-ttatttttaatcaagcaaagtaaattatgtgagtcaacaaaggt |
34025370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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