View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_high_24 (Length: 206)
Name: NF17036_high_24
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 12309387 - 12309225
Alignment:
| Q |
22 |
agcttagagcttagaagacactggacgtctatagagtacgaacctctttgaacctgacaatattgggatgcctcagtgatctatgatttataatttccct |
121 |
Q |
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| T |
12309387 |
agcttagagcttagaagacaccggacgtcaacagagtacgaacctccttgaacctgacaatattgggatgcctcagtgatctatgatttataatttccct |
12309288 |
T |
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| Q |
122 |
tcgtacattttcatctatctgttaaaaaataggtatggttaaaatcaatatcaagcattgaaaa |
185 |
Q |
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| T |
12309287 |
ttgtacattttcatctatctgttaaaaaataggtatggtt-aaatcaatatcaaacattgaaaa |
12309225 |
T |
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Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 34077584 - 34077494
Alignment:
| Q |
62 |
aacctctttgaacctgacaatattgggatgcctcagtgatctatgatttataatttcccttcgtacattttcatctatctgttaaaaaata |
152 |
Q |
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| T |
34077584 |
aacctccttgaacctgacaatattgggatgcctcaatgatctatggtttataatttctctctgtacattttcatcaatctgtaaagaaata |
34077494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 27107714 - 27107794
Alignment:
| Q |
62 |
aacctctttgaacctgacaatattgggatgcctcagtgatctatgatttataatttcccttcgtacattttcatctatctg |
142 |
Q |
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| T |
27107714 |
aacctctttgaacctaacaatattaggatgcttcaatgatctatggttcatgatttccctttggacattatcatcaatctg |
27107794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 37601943 - 37601884
Alignment:
| Q |
63 |
acctctttgaacctgacaatattgggatgcctcagtgatctatgatttataatttccctt |
122 |
Q |
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| T |
37601943 |
acctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctt |
37601884 |
T |
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