View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_1 (Length: 950)
Name: NF17036_low_1
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 594 - 798
Target Start/End: Complemental strand, 26159466 - 26159263
Alignment:
| Q |
594 |
cttaaccttcccttgaaaaccccttcaagataaaccaatcaactccaaagccctgcctaaaccttgatctagaaagtgatctccactggcatccaacaac |
693 |
Q |
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| T |
26159466 |
cttaaccttcccttgaaaaccccttcatgataaaccaatcaactccaaagccctgcctaaaccttgatctagacagcgatctccactagcatccaacaac |
26159367 |
T |
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| Q |
694 |
ccacaaatagtcccacaaacttccaaatctaactcttctccttgcatccaacaacactaggatttttaagtggtccaacaagttttcctataacattttc |
793 |
Q |
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|||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||||||||| ||||||| ||| |
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| T |
26159366 |
ccac-aatagtcccacaaccttccaaatctaactattctcattgcatccaacaacattagggtttttaagtggttcaacaagttttcccataacatcttc |
26159268 |
T |
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| Q |
794 |
agccc |
798 |
Q |
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||||| |
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| T |
26159267 |
agccc |
26159263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 26200452 - 26200269
Alignment:
| Q |
101 |
cgttcccaaaacgagaggtaataaagattgattgttgcatttcagcttttctgtccttgtactgataataataactccattgtgtagaacatggattctg |
200 |
Q |
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| T |
26200452 |
cgttcccaaaaagagaggtaataaagattgattgttgcatttcaccttttctgtccttgtactgataataataactccattgtgtagaacatggattctg |
26200353 |
T |
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| Q |
201 |
attcattttatgctggatgctgctgatttcagaaa-ggagaagattctctgtaccaatagcgaggtaatcattgaatcatattt |
283 |
Q |
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| T |
26200352 |
attcaatttatgctgcctgctgctgatttcagaaacgggaaacattctctgtaccaatagcgaggtaatcattcaatcttattt |
26200269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 555 - 846
Target Start/End: Complemental strand, 26199992 - 26199702
Alignment:
| Q |
555 |
ttggtagtgatttaattttaacaatcaacttccttgatccttaaccttcccttgaaaaccccttcaagataaaccaatcaactccaaagccctgcctaaa |
654 |
Q |
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| T |
26199992 |
ttggtagtaatttaaatt-aaccatcaatttccttagtccttaaccttcccttgaaaatccctttaagataaaccaatcaaccccaaagtcttgcttgaa |
26199894 |
T |
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| Q |
655 |
ccttgatctagaaagtgatctccactggcatccaacaacccacaaatagtcccacaaacttccaaatctaactcttctccttgcatccaacaacactagg |
754 |
Q |
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| T |
26199893 |
ccttgatctaaacagagatctccactggaatccaacaatccac-aatagtcccgcaagcttccaaatccaattcttcttcttgcatctaacaacactagg |
26199795 |
T |
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| Q |
755 |
atttttaagtggtccaacaagttttcctataacattttcag-ccccgtagtgatcaattctgtccttacaaagattcgcttgcctccaataac |
846 |
Q |
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| T |
26199794 |
atttctaagtggttgaacaagttttctcataacatcttcagcccccatagcgttcaattatgtcctcacaaagattcacttgcctccgataac |
26199702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 231 - 335
Target Start/End: Complemental strand, 26168223 - 26168119
Alignment:
| Q |
231 |
agaaaggagaagattctctgt--accaatagcgaggtaatcattgaatcatattttataataagaattattttttcgtgaaaagaaaaattaaacatgtt |
328 |
Q |
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||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| || ||||||||||| |
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| T |
26168223 |
agaaagggaaagattctctgtgtaccagtagcgaggtaatcattcaatcatattttataataagaattattttttcataaaaag--aagttaaacatgtt |
26168126 |
T |
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| Q |
329 |
tttaatc |
335 |
Q |
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||||||| |
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| T |
26168125 |
tttaatc |
26168119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 26123740 - 26123592
Alignment:
| Q |
183 |
tgtagaacatggattctgattcattttatgctggatgctgctgatttcagaaaggagaagattctctgt--accaatagcgaggtaatcattgaatcata |
280 |
Q |
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| T |
26123740 |
tgtagaacatggattctgattcaactactgctg-at--tgctgaattgagaaagggaaagattctctgtgtaccagtagcgaggtaatcattcaatcgta |
26123644 |
T |
|
| Q |
281 |
ttttataataagaattattttttcgtgaaaagaaaaattaaacatgtttttaatc |
335 |
Q |
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|||||||||||||||||||||||| | || |||| |||||||||||||||||| |
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| T |
26123643 |
ttttataataagaattattttttc---ataaaaaaagttaaacatgtttttaatc |
26123592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 26165787 - 26165722
Alignment:
| Q |
337 |
ataaaactcatcttctagcttcacctatctcgctgtgatcttgaccgattcaacaacatcaatttt |
402 |
Q |
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| T |
26165787 |
ataaaactcatcttctaccttcaccaatctcgctgcgattttggccgattgaacaacatcaatttt |
26165722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 98
Target Start/End: Complemental strand, 26123908 - 26123877
Alignment:
| Q |
67 |
attgtttctatcgatcagtcttctgtttgcaa |
98 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26123908 |
attgtttctatcgatcagtcttctgtttgcaa |
26123877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 98
Target Start/End: Complemental strand, 26168425 - 26168394
Alignment:
| Q |
67 |
attgtttctatcgatcagtcttctgtttgcaa |
98 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26168425 |
attgtttctatcgatcagtcttctgtttgcaa |
26168394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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