View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17036_low_11 (Length: 307)

Name: NF17036_low_11
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17036_low_11
NF17036_low_11
[»] chr2 (5 HSPs)
chr2 (53-167)||(36638198-36638314)
chr2 (230-307)||(36638058-36638135)
chr2 (238-267)||(1054207-1054236)
chr2 (238-267)||(7575468-7575497)
chr2 (238-267)||(42079057-42079086)
[»] scaffold0259 (1 HSPs)
scaffold0259 (238-267)||(5040-5069)
[»] chr8 (6 HSPs)
chr8 (238-267)||(16096647-16096676)
chr8 (238-267)||(18087697-18087726)
chr8 (238-267)||(41545814-41545843)
chr8 (238-267)||(44257069-44257098)
chr8 (238-266)||(13139510-13139538)
chr8 (238-266)||(40303429-40303457)
[»] chr7 (1 HSPs)
chr7 (238-267)||(40014707-40014736)
[»] chr6 (1 HSPs)
chr6 (238-267)||(954698-954727)
[»] chr5 (1 HSPs)
chr5 (238-267)||(7179861-7179890)
[»] chr4 (1 HSPs)
chr4 (238-267)||(55450471-55450500)
[»] chr3 (4 HSPs)
chr3 (238-267)||(3890974-3891003)
chr3 (238-267)||(33213761-33213790)
chr3 (238-267)||(43339311-43339340)
chr3 (239-267)||(27852348-27852376)
[»] chr1 (4 HSPs)
chr1 (238-267)||(34334182-34334211)
chr1 (238-267)||(36731601-36731630)
chr1 (239-267)||(48562105-48562133)
chr1 (238-266)||(51088467-51088495)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 36638314 - 36638198
Alignment:
Q  53 aaaagtattactactaataataattcttagcaagccacctcagcgttgttttaataaaat--nnnnnnnnntgactaacttgtacgcatttttagagata 150  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||    
T  36638314 aaaagtattacttctaataataattcttagcaagccacctcagcgttgttttaataaaatacaaaaaataatgactaacttgtacgcatttttagagata 36638215  T
Q  151 aagaatttgaacgtgtc 167  Q
    |||||||||||||||||    
T  36638214 aagaatttgaacgtgtc 36638198  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 36638135 - 36638058
Alignment:
Q  230 tgacgataaaagtgttacaaataaataagataaaagacgtagaagaaattgtgtcaattcaataataccagttaattt 307  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  36638135 tgacgattaaagtgttacaaataaataagataaaagacgtggaagaaattgtgtcaattcaatagtatcagttaattt 36638058  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 1054207 - 1054236
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  1054207 aaagtgttacaaataaataagataaaagac 1054236  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 7575468 - 7575497
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  7575468 aaagtgttacaaataaataagataaaagac 7575497  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 42079086 - 42079057
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  42079086 aaagtgttacaaataaataagataaaagac 42079057  T

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Target: scaffold0259 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 5040 - 5069
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  5040 aaagtgttacaaataaataagataaaagac 5069  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 16096676 - 16096647
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  16096676 aaagtgttacaaataaataagataaaagac 16096647  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 18087726 - 18087697
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  18087726 aaagtgttacaaataaataagataaaagac 18087697  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 41545843 - 41545814
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  41545843 aaagtgttacaaataaataagataaaagac 41545814  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 44257098 - 44257069
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  44257098 aaagtgttacaaataaataagataaaagac 44257069  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 13139538 - 13139510
Alignment:
Q  238 aaagtgttacaaataaataagataaaaga 266  Q
    |||||||||||||||||||||||||||||    
T  13139538 aaagtgttacaaataaataagataaaaga 13139510  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 40303429 - 40303457
Alignment:
Q  238 aaagtgttacaaataaataagataaaaga 266  Q
    |||||||||||||||||||||||||||||    
T  40303429 aaagtgttacaaataaataagataaaaga 40303457  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 40014707 - 40014736
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  40014707 aaagtgttacaaataaataagataaaagac 40014736  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 954698 - 954727
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  954698 aaagtgttacaaataaataagataaaagac 954727  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 7179890 - 7179861
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  7179890 aaagtgttacaaataaataagataaaagac 7179861  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 55450471 - 55450500
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  55450471 aaagtgttacaaataaataagataaaagac 55450500  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 3891003 - 3890974
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  3891003 aaagtgttacaaataaataagataaaagac 3890974  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 33213790 - 33213761
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  33213790 aaagtgttacaaataaataagataaaagac 33213761  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 43339340 - 43339311
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  43339340 aaagtgttacaaataaataagataaaagac 43339311  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 27852376 - 27852348
Alignment:
Q  239 aagtgttacaaataaataagataaaagac 267  Q
    |||||||||||||||||||||||||||||    
T  27852376 aagtgttacaaataaataagataaaagac 27852348  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 34334182 - 34334211
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  34334182 aaagtgttacaaataaataagataaaagac 34334211  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 36731630 - 36731601
Alignment:
Q  238 aaagtgttacaaataaataagataaaagac 267  Q
    ||||||||||||||||||||||||||||||    
T  36731630 aaagtgttacaaataaataagataaaagac 36731601  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 48562133 - 48562105
Alignment:
Q  239 aagtgttacaaataaataagataaaagac 267  Q
    |||||||||||||||||||||||||||||    
T  48562133 aagtgttacaaataaataagataaaagac 48562105  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 51088467 - 51088495
Alignment:
Q  238 aaagtgttacaaataaataagataaaaga 266  Q
    |||||||||||||||||||||||||||||    
T  51088467 aaagtgttacaaataaataagataaaaga 51088495  T

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