View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_13 (Length: 288)
Name: NF17036_low_13
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 43072436 - 43072696
Alignment:
| Q |
18 |
tggctagctccaactcagcatagctgaaccatcttggaggttttccaaatacaggagctttgtgttgacatattgaacataatggtggtgggccaggtgc |
117 |
Q |
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| T |
43072436 |
tggctagctccaactcagcatagctgaaccatcttggaggttttccaaataccggagctttgtgttgacatattgaacataatggtggtgggccaggtgc |
43072535 |
T |
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| Q |
118 |
ggcatttctagataacgctactgcttctcttacgcttccactgaattccatgttagtcttataagttgagttttcaatttcggcttctctgtcaagcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43072536 |
ggcatttctagataacgctactgcttctcttacgcttccactgaattccatgttagtcttataagttgagttttcaatttcggcttctctgtcaagcctt |
43072635 |
T |
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| Q |
218 |
gagaacttttctagcaaagctctagttgtagacatttgaagcctgtcacaagatctctctg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43072636 |
gagaacttttctagcaaagctctagttgtagacatttgaagcctgtcacaagatctctctg |
43072696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 5381326 - 5381203
Alignment:
| Q |
26 |
tccaactcagcatagctgaaccatcttggaggttttccaaatacaggagctttgtgttgacatattgaacataatggtggtgggccaggtgcggcatttc |
125 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||| ||| ||||||| |
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| T |
5381326 |
tccaactcagcatagctgaaccacctcggaggttttccaaatacaggtgccttgtgttgacatattgaacacaatggaggtggaccaagtggagcatttc |
5381227 |
T |
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| Q |
126 |
tagataacgctactgcttctctta |
149 |
Q |
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| T |
5381226 |
ctgataatgctattgcttctctta |
5381203 |
T |
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