View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_18 (Length: 250)
Name: NF17036_low_18
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38025967 - 38026206
Alignment:
| Q |
1 |
tatgcaacaaatctctgaagcttataagaaatctgtcagtagcatatatttctaaagtcaaaattgcatataacctattattagtacagttctagtcaca |
100 |
Q |
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| T |
38025967 |
tatgcaacaaatctctgaagcttataagaaatctgtcagcagcatatatttctaaagtcaaaattgcatataacctattattagtacagttctagtcaca |
38026066 |
T |
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| Q |
101 |
ttcttgacaatggtcagaataaattcatgaccaaatcatctgaaagcaccttgtattatatatcaagtttcagattttctttatgtaggcacaaattctg |
200 |
Q |
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| T |
38026067 |
ttcttgacaatggtcagaataaattcatgaccaaatcatctgaaagaaccttgtattatatatcaagtttcagattttctttatgtaggcacaaattctg |
38026166 |
T |
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| Q |
201 |
cagcagttgcgtcaaaaccagatctagacaactagtatta |
240 |
Q |
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| T |
38026167 |
cagcagttgcgtcaaaaccagatctagacaactagtatta |
38026206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 38024353 - 38024449
Alignment:
| Q |
64 |
ttgcatataacctattattagtacagttctagtcacattcttgacaatggtcagaataaattcatgaccaaatcatctgaaagcaccttgtattatat |
161 |
Q |
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|||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||| |||||||||| |||||||| |
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| T |
38024353 |
ttgcatataacctattat-agtacagttctaatcacattcgtgacaatggtcagaataaattcatgacctaaacatctaaaagcaccttatattatat |
38024449 |
T |
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