View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_19 (Length: 249)
Name: NF17036_low_19
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_19 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 37 - 249
Target Start/End: Original strand, 43179294 - 43179506
Alignment:
| Q |
37 |
ttatgagtagctcatttgttatgtttattggtatgttacataataagcaaatgttagtatgtctttaaaaaacttcctttcaaaattcaactcggaaaca |
136 |
Q |
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| T |
43179294 |
ttatgagtagctcatttgttatgtttattggtatgttaaataataagcaaatattagtatgtctttaaaaaacatcctttcaaaattcaagtcgaaaaca |
43179393 |
T |
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| Q |
137 |
cactccaagtttttcttgctttggcgacaccttggtgaaatgcaaaattggaaggttttccaaaaagtgacaaaccaaaagaatgaaattagtatcaaag |
236 |
Q |
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| T |
43179394 |
cactccaagtttttcttgctttgtcgacaccttggtgaaatgcaaaattggaagattttccaaaaagtgacaaaccaaaagaatgaaattagtattaaaa |
43179493 |
T |
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| Q |
237 |
ggtcaaaaactca |
249 |
Q |
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| T |
43179494 |
ggtcaaaaactca |
43179506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43178811 - 43178857
Alignment:
| Q |
1 |
aacgaccaaattgaatctt-catcttcactgatataattatgagtag |
46 |
Q |
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| T |
43178811 |
aacgaccgaattgaatctttcatcttcactaatataattatgagtag |
43178857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 10264729 - 10264772
Alignment:
| Q |
199 |
aaaagtgacaaaccaaaagaatgaaattagtatcaaagggtcaaa |
243 |
Q |
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| T |
10264729 |
aaaagtgacaaaccaaaagtatgaaatttgtatc-aagggtcaaa |
10264772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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