View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_22 (Length: 241)
Name: NF17036_low_22
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 37864708 - 37864501
Alignment:
| Q |
19 |
attaccgtgttttaaataagtttcaagactaattcaagataattt-aagtcctcatcagaaaatgacccaagtctttcaatactaaacaaagactaatgc |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37864708 |
attaccatgttttaaataagtttcaagactaattcaagataattttaagtcctcatcagaaaatgacccaagtctttcaatactaaacaaagactaatgc |
37864609 |
T |
|
| Q |
118 |
aagaattaccatgttttatattaattgtatgannnnnnnnattttactatatatacactacgaagnnnnnnnntaatttggtgcccctaaaattttagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
37864608 |
aagaattaccatgttttatattaattgtatgattttttttattttactatatatacactatgaag-aaaaaaataatttggtgcccctaaaattttagtg |
37864510 |
T |
|
| Q |
218 |
ccttctgtg |
226 |
Q |
| |
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||| |||| |
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| T |
37864509 |
gcttgtgtg |
37864501 |
T |
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