View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17036_low_23 (Length: 236)

Name: NF17036_low_23
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17036_low_23
NF17036_low_23
[»] chr5 (12 HSPs)
chr5 (1-221)||(8547238-8547458)
chr5 (80-213)||(8637749-8637882)
chr5 (80-221)||(8645094-8645235)
chr5 (84-182)||(9073872-9073970)
chr5 (84-182)||(8529805-8529903)
chr5 (83-182)||(2844230-2844329)
chr5 (83-182)||(2856063-2856162)
chr5 (83-182)||(2873676-2873775)
chr5 (19-178)||(1599444-1599591)
chr5 (84-213)||(8536369-8536498)
chr5 (83-182)||(2904182-2904281)
chr5 (167-221)||(8678689-8678743)
[»] chr6 (1 HSPs)
chr6 (3-182)||(16717115-16717294)
[»] scaffold0627 (1 HSPs)
scaffold0627 (59-189)||(5458-5588)
[»] chr7 (2 HSPs)
chr7 (84-182)||(48360992-48361090)
chr7 (22-181)||(35780650-35780806)
[»] chr4 (1 HSPs)
chr4 (84-182)||(9443966-9444064)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8547458 - 8547238
Alignment:
Q  1 ctctgttgcaagcaatataagggcgcttggatttattcttgatcctgtcacttttctccctaaatgatttgatataaccacgaagaggaagcttgaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547458 ctctgttgcaagcaatataagggcgcttggatttattcttgatcctgtcacttttctccctaaatgatttgatataaccacgaagaggaagcttgaatat 8547359  T
Q  101 aggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacactagtctatcgtcatctgtc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547358 aggatcaagcttcacatgattgttgcttccaatcttgaacttttcaggctcacactcaagatggtacatggttcttgacactagtctatcgtcatctgtc 8547259  T
Q  201 caaatcattagacaaacttgt 221  Q
    |||||||||||||||||||||    
T  8547258 caaatcattagacaaacttgt 8547238  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 8637749 - 8637882
Alignment:
Q  80 acgaagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgac 179  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||    
T  8637749 acgaagaggaagcttaaatataggcgcaagcttcacatgattgttgcttccaatctcaaacttttcatgatcacactcaagaaggtacatggttcttgac 8637848  T
Q  180 actagtctatcgtcatctgtccaaatcattagac 213  Q
    ||||||||| | |||| ||||| |||||| ||||    
T  8637849 actagtctaccatcatttgtccgaatcatgagac 8637882  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 8645094 - 8645235
Alignment:
Q  80 acgaagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgac 179  Q
    ||||||||||||||| ||||||||  ||||||| ||| || ||||||||||||| |  ||||||||||| |||||||||||| ||||||| |||||||||    
T  8645094 acgaagaggaagcttaaatataggtgcaagcttgacacgactgttgcttccaatttgaaacttttcaggatcacactcaagaaggtacatagttcttgac 8645193  T
Q  180 actagtctatcgtcatctgtccaaatcattagacaaacttgt 221  Q
    |||||||||  ||||||| ||| |||||| ||||||||||||    
T  8645194 actagtctacagtcatctatccgaatcatgagacaaacttgt 8645235  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 9073970 - 9073872
Alignment:
Q  84 agaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||    
T  9073970 agaggaagcttgaatataggctcaagcttgacatgtttgttgcttccaatctcaaacttttcaggttcacactcaagaaggtacatggttctcgacact 9073872  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 8529805 - 8529903
Alignment:
Q  84 agaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||| |||||||||||||    
T  8529805 agaggaagcttgaatataggtgcaagcttgacatgattgttgcttccaatctcaaacttatcaggctcgcactcaagaaggtacagggttcttgacact 8529903  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 2844329 - 2844230
Alignment:
Q  83 aagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||| |||| | | |||||||||||    
T  2844329 aagaggaagctcgaatatagggtcaagcttcacatgatttttgcttccaatctcaaacttttcagcttcacactcaagaaggtataggtttcttgacact 2844230  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 2856162 - 2856063
Alignment:
Q  83 aagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||| |||| | | |||||||||||    
T  2856162 aagaggaagctcgaatatagggtcaagcttcacatgatttttgcttccaatctcaaacttttcagcttcacactcaagaaggtataggtttcttgacact 2856063  T

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Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 2873775 - 2873676
Alignment:
Q  83 aagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||  || ||||||||| |||| | | |||||||||||    
T  2873775 aagaggaagctcgaatatagggtcaagcttcacatgattgttgcttccaatctcaaacttttcagcttcgcactcaagaaggtataggtttcttgacact 2873676  T

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Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 1599591 - 1599444
Alignment:
Q  19 aagggcgcttggatttattcttgatcctgtcacttttctccctaaatgatttgatataaccacgaagaggaagcttgaatataggatcaagcttcacatg 118  Q
    ||||||||||||||| ||| ||||||  ||||||||| |||||||||||| ||            |||||||||||||| |||||  ||||||||||| |    
T  1599591 aagggcgcttggattcattattgatctcgtcacttttatccctaaatgatctg------------agaggaagcttgaacataggcgcaagcttcacacg 1599504  T
Q  119 attgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttga 178  Q
    || ||||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||    
T  1599503 atcgttgcttccaatctcaaacttttcaggttcacactcaagaaggtacaaggttcttga 1599444  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 8536369 - 8536498
Alignment:
Q  84 agaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacacta 183  Q
    |||||||||||||| |||||  |||| |||||||||| ||||||||||||||| ||||||| ||| ||| |||||||| ||||||| |||||||| |||     
T  8536369 agaggaagcttgaacataggcacaagtttcacatgatcgttgcttccaatctcaaacttttgaggatcagactcaagaaggtacattgttcttgaaactc 8536468  T
Q  184 gtctatcgtcatctgtccaaatcattagac 213  Q
    | |||| |||||  |||| |||||| ||||    
T  8536469 ggctatagtcattggtccgaatcatgagac 8536498  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 2904281 - 2904182
Alignment:
Q  83 aagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||| | ||||||||| | |||||||||| |||||||| |||||| |||||||| |||||| || ||||||||| |||| | | |||||||||||    
T  2904281 aagaggaagttcgaatataggcttaagcttcacaagattgttggttccaaactcgaactattcaggttcgcactcaagaaggtataggtttcttgacact 2904182  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 8678689 - 8678743
Alignment:
Q  167 catggttcttgacactagtctatcgtcatctgtccaaatcattagacaaacttgt 221  Q
    ||||||||||||||||||||||  ||||||| ||| |||||| ||||||||||||    
T  8678689 catggttcttgacactagtctacagtcatctatccgaatcatgagacaaacttgt 8678743  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 16717115 - 16717294
Alignment:
Q  3 ctgttgcaagcaatataagggcgcttggatttattcttgatcctgtcacttttctccctaaatgatttgatataaccacgaagaggaagcttgaatatag 102  Q
    ||||||| ||||||||||  | ||||| |||||||||| ||| |||||||||||  || || |||||||| || ||| |||||||||||  |||||||||    
T  16717115 ctgttgccagcaatataaacgtgcttgtatttattctttatcttgtcacttttcatcccaagtgatttgacatcaccgcgaagaggaagtctgaatatag 16717214  T
Q  103 gatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    | ||||| |||||||||||||||||||||||||| |||||||| || || ||||| ||| |||| | |||||||||||||    
T  16717215 gctcaagattcacatgattgttgcttccaatctcaaacttttctggatcgcactctagaaggtagagggttcttgacact 16717294  T

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Target: scaffold0627 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 5458 - 5588
Alignment:
Q  59 cctaaatgatttgatataaccacgaagaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactca 158  Q
    ||||| |||||||| || ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| || || |||    
T  5458 cctaagtgatttgacatcaccacgaagagtaagcctgaatataggctcaagcttcacatgattgttgcttccaatctcaaactttttaggatcgcattca 5557  T
Q  159 agatggtacatggttcttgacactagtctat 189  Q
    ||| |||| | ||||||||||||| ||||||    
T  5558 agaaggtatagggttcttgacactcgtctat 5588  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 48361090 - 48360992
Alignment:
Q  84 agaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  48361090 agaggaagcttgaatataggtgtaagcttcacatggttgttgcttccaatctcaaacttttcaggatcacactcaagaaggtacatggttcttgacact 48360992  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 35780650 - 35780806
Alignment:
Q  22 ggcgcttggatttattcttgatcctgtcacttttctccctaaatgatttgatataaccacgaagaggaagcttgaatataggatcaagcttcacatgatt 121  Q
    ||||||||||||||||||||||| |||   |||||||| ||||| ||||   |||   ||||||||||||||| ||||| || |||||||||||| ||||    
T  35780650 ggcgcttggatttattcttgatcttgtgcattttctccttaaataatttcccata---acgaagaggaagcttaaatatggggtcaagcttcacaagatt 35780746  T
Q  122 gttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacac 181  Q
    ||| ||||||| ||| |||||||||||||||||||||||| ||| || ||||||||||||    
T  35780747 gttccttccaaactcaaacttttcaggctcacactcaagaaggtgcagggttcttgacac 35780806  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 9443966 - 9444064
Alignment:
Q  84 agaggaagcttgaatataggatcaagcttcacatgattgttgcttccaatctcgaacttttcaggctcacactcaagatggtacatggttcttgacact 182  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| |||| | |||||||||||||    
T  9443966 agaggaagcttgaatataggtgcaagcttgacatgattgttgcttccaatctcaaacttatcaggctcgcactcaagaaggtatagggttcttgacact 9444064  T

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