View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_3 (Length: 502)
Name: NF17036_low_3
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 9 - 487
Target Start/End: Original strand, 5676861 - 5677338
Alignment:
| Q |
9 |
agcacagatagaaagcttactgacattgcattcttctcttttggtaataggctcactattgtctctaaaataaccctcttttcatgctcttgtcttggtt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5676861 |
agcatagatagaaagcttactgacattgcattcttctcttttggtaataggctcactattgtctctaaaataaccctcttttcatgctcttgtcttggtt |
5676960 |
T |
|
| Q |
109 |
caattttcttccttccctttccaaatatatcctgctcgaacaaaagaaaaaattattaagaattaaggattgaatctcaagaaaagaaaagctaagttac |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5676961 |
caatcttcttccttccctttccaaatatatcctgctcgaaagaaagaaaaaattattaagaattaaggattgaatctcaagaaaagaaaagctaagttac |
5677060 |
T |
|
| Q |
209 |
aatgcttttgagtgtataaaggtctaattaatgttcgcatttttcaaaacatgtatcttatatactacaatcatagtaattgtgttcttcttttcttttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5677061 |
aatgcttttgagtgtataaaggtctaattaatgttcgcatttttcaaaacatgtatcttatatactgcaatcatagtaattgtgttcttcttttcttttg |
5677160 |
T |
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| Q |
309 |
caaacaaggagatttctacctatggagcaccgacacagatatgaaaatcatcacaacactaacacatagacactcgttaaatgtaattatatgtgtcagt |
408 |
Q |
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| T |
5677161 |
caaac-aggagatttctacctatggagcaccgacacaaatatgaaaatcatcacaacactaacacatagacactcgttaaatgtaattatatgtgtcagt |
5677259 |
T |
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| Q |
409 |
gcgggaaacagacacaacttgtgtcggtgctacatagatctctactctataaaagcatatttatttttaacttttctat |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677260 |
gcgggaaacagacacaacttgtgtcggtgctacatagatctctactctataaaagcatatttatttttaacttttctat |
5677338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 39778956 - 39778829
Alignment:
| Q |
18 |
agaaagcttactgacattgcattcttctcttttggtaataggctcactattgtctctaaaataaccctcttttcatgctcttgtcttggttcaattttct |
117 |
Q |
| |
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|||||||| || || |||||||||||||| |||| | |||||||||| | |||||||||||| ||||| |||||||||| || ||| || | || |
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| T |
39778956 |
agaaagctgacagatattgcattcttctcccttggcataaggctcactagtatctctaaaataagtctcttctcatgctcttcatgtgcttctatatcct |
39778857 |
T |
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| Q |
118 |
tccttccctttccaaatatatcctgctc |
145 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
39778856 |
tccttccctttccaaatatctcctgctc |
39778829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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