View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_4 (Length: 479)
Name: NF17036_low_4
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 38290801 - 38291125
Alignment:
| Q |
1 |
aaatacctcacagctagcatatcctaatatcaatcacactgacatcaatgtcatcatgttcaacgtgtgacaactatattattgcctcaaaccccacctt |
100 |
Q |
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| T |
38290801 |
aaatacctcacagctagcatatcctaatatcaatcacactgacatcaatgtcatcatgttcaacgtgtgacaactatattattgcctcaaaccccacctt |
38290900 |
T |
|
| Q |
101 |
aattagtgtataatattagcatgaagcatggtcaattagggtccgagccacacaaatcaaattacatcatcatgtagcaaatagcagtatttgttataca |
200 |
Q |
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| T |
38290901 |
aattagtgtataatattagcatgaagcatggtcaattagggtccgagccacacaaatcaaattacatcatcatgtagcaaatagcagtatttgttataca |
38291000 |
T |
|
| Q |
201 |
cgttttcttcttgaccaagttatatgttatatatatgctattaaatacaccatgttattcaaaaaattaaattaatcacagaaatttattagaagaaaat |
300 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38291001 |
cgtttttttcttgaccaagttatatgt--tatatatgctattaaatacaccatgttattcaaaaaattaaattaatcacagaaatttattagaagaaaat |
38291098 |
T |
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| Q |
301 |
tgttaaatttctttctcatttcgtcac |
327 |
Q |
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| T |
38291099 |
tgttaaatttctttctcatttcgtcac |
38291125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 354 - 450
Target Start/End: Original strand, 38291954 - 38292050
Alignment:
| Q |
354 |
tcacaaaatttagtaacaaagaaattggaaatgtatttcacttttttatatccaactttgtcagtacttttattctttgtattgtcaatcaacatat |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38291954 |
tcacaaaatttagtaacaaagaaattggaaatgtatttcacttttttatatccaactttgtcagtacttttattctttgtattgtcaatcaacatat |
38292050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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