View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17036_low_5 (Length: 463)

Name: NF17036_low_5
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17036_low_5
NF17036_low_5
[»] chr2 (5 HSPs)
chr2 (19-455)||(32785611-32786046)
chr2 (209-418)||(1037536-1037748)
chr2 (354-418)||(44575471-44575535)
chr2 (79-107)||(32786060-32786088)
chr2 (184-272)||(45245106-45245194)
[»] chr8 (8 HSPs)
chr8 (180-418)||(18315145-18315386)
chr8 (322-416)||(32151429-32151523)
chr8 (186-291)||(27922500-27922605)
chr8 (209-294)||(17636400-17636485)
chr8 (180-266)||(32151287-32151373)
chr8 (209-266)||(17628041-17628098)
chr8 (179-272)||(34936184-34936277)
chr8 (209-289)||(21235573-21235653)
[»] chr4 (28 HSPs)
chr4 (223-418)||(1600448-1600646)
chr4 (209-418)||(55908600-55908812)
chr4 (218-418)||(8186963-8187166)
chr4 (209-292)||(1519143-1519226)
chr4 (209-418)||(1548298-1548508)
chr4 (179-292)||(8184031-8184144)
chr4 (181-289)||(553466-553574)
chr4 (362-418)||(12121329-12121385)
chr4 (180-418)||(1524358-1524599)
chr4 (179-381)||(1552676-1552881)
chr4 (209-276)||(659726-659791)
chr4 (362-418)||(1489233-1489289)
chr4 (209-292)||(532204-532287)
chr4 (325-418)||(7225755-7225851)
chr4 (223-293)||(12121457-12121527)
chr4 (223-268)||(12116600-12116645)
chr4 (182-274)||(558486-558578)
chr4 (184-292)||(1513408-1513516)
chr4 (219-291)||(1545798-1545870)
chr4 (223-291)||(7307889-7307957)
chr4 (326-404)||(558630-558711)
chr4 (184-275)||(1508021-1508112)
chr4 (209-292)||(55505109-55505192)
chr4 (179-273)||(570336-570430)
chr4 (242-292)||(1489362-1489412)
chr4 (242-292)||(1537768-1537818)
chr4 (357-398)||(532349-532390)
chr4 (362-418)||(1504983-1505039)
[»] scaffold0295 (1 HSPs)
scaffold0295 (211-418)||(496-706)
[»] chr5 (5 HSPs)
chr5 (186-418)||(32267467-32267699)
chr5 (209-276)||(41901552-41901619)
chr5 (209-291)||(41889556-41889638)
chr5 (209-276)||(37937902-37937969)
chr5 (209-276)||(38267573-38267640)
[»] chr3 (9 HSPs)
chr3 (179-292)||(51113782-51113895)
chr3 (314-416)||(514602-514707)
chr3 (189-292)||(51120894-51120997)
chr3 (209-274)||(27005791-27005856)
chr3 (209-273)||(33093947-33094011)
chr3 (322-416)||(1657375-1657472)
chr3 (208-274)||(37580839-37580905)
chr3 (209-274)||(36811046-36811111)
chr3 (209-274)||(37587573-37587638)
[»] chr6 (10 HSPs)
chr6 (212-292)||(6432179-6432259)
chr6 (306-418)||(7119269-7119381)
chr6 (306-418)||(7131747-7131859)
chr6 (223-276)||(28935078-28935131)
chr6 (209-292)||(6410021-6410104)
chr6 (209-266)||(6394879-6394936)
chr6 (184-276)||(6402850-6402942)
chr6 (209-289)||(12102281-12102361)
chr6 (209-266)||(6585264-6585321)
chr6 (209-269)||(7994206-7994266)
[»] chr1 (6 HSPs)
chr1 (209-276)||(19468516-19468583)
chr1 (325-418)||(9581199-9581295)
chr1 (325-418)||(9586767-9586863)
chr1 (209-291)||(52082596-52082678)
chr1 (208-275)||(9586653-9586720)
chr1 (209-275)||(9581084-9581152)
[»] chr7 (1 HSPs)
chr7 (209-287)||(18724358-18724440)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 32786046 - 32785611
Alignment:
Q  19 gaaacgaaacgaacaatatgcactaaactgtaacagtttcatcattgttttgggaaccctagtattgtatatttgtatatggtatatttagatcagcaat 118  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786046 gaaacaaaacgaacaatatgcactaaagtgtaacagtttcatcattgttttgggaaccctagtattgtatatttgtatatggtatatttagatcagcaat 32785947  T
Q  119 tgacagtccatacgacatccgtgtcaacccttgttttgggaatgctagttaacatgccttgtaacagtttcaaaagcccatgaaaacttattgagatcac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785946 tgacagtccatacgacatccgtgtcaacccttgttttgggaatgctagttaacatgccttgtaacagtttcaaaagcccatgaaaacttattgagatcac 32785847  T
Q  219 ataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttgaaaagtgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  32785846 ataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaaaagtgg 32785747  T
Q  319 gccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785746 tccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 32785647  T
Q  419 nnnnnnntagaagaaaacatcctgatgctttcatctc 455  Q
           ||||||||||||||||||||||||||||||    
T  32785646 -aaaaaatagaagaaaacatcctgatgctttcatctc 32785611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 418
Target Start/End: Complemental strand, 1037748 - 1037536
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattct 308  Q
    ||||||||| ||| |||| |||||||||||  | ||||||||||||||| |||||||||| ||  |||  ||||||||| |||| | |  | |  | |||    
T  1037748 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 1037649  T
Q  309 tgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagt 405  Q
    |||| ||| ||| |||||||||||||||| |||| |||||||   ||||| || |||||||||||||||||||||||||| |||  |||||||||||||     
T  1037648 tgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaaga 1037549  T
Q  406 agttgcaaattgg 418  Q
    | |||||||||||    
T  1037548 aattgcaaattgg 1037536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 44575535 - 44575471
Alignment:
Q  354 aaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    ||||| ||||||| |||||   ||||||| ||||||| ||||||||||||||| |||||||||||    
T  44575535 aaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgg 44575471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 32786088 - 32786060
Alignment:
Q  79 agtattgtatatttgtatatggtatattt 107  Q
    |||||||||||||||||||||||||||||    
T  32786088 agtattgtatatttgtatatggtatattt 32786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 45245194 - 45245106
Alignment:
Q  184 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagttt 272  Q
    |||| |||||||||| || ||||  ||||||||||||  |||| |||||||||||   |||| | |||||| ||||||||||| |||||    
T  45245194 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttt 45245106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 180 - 418
Target Start/End: Complemental strand, 18315386 - 18315145
Alignment:
Q  180 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagat 279  Q
    |||||||| |||||||| | || ||||  ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||||  |    
T  18315386 taacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaact 18315287  T
Q  280 ttaaagttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaaca---tcttaaaaattgacaaataccttcttcag 376  Q
    ||||||||||||| | |  |||  |||||||||    | || || ||||| |||||||||| ||||||   || ||||| ||||||||||||||||||||    
T  18315286 ttaaagttcattccacgtagcttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcag 18315187  T
Q  377 atatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
     |||||||| ||| |||||||||||||| |  ||||||||||    
T  18315186 gtatgttatcgcagtagctcaaatcaagcaactgcaaattgg 18315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 32151429 - 32151523
Alignment:
Q  322 aaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaatt 416  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  32151429 aaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaatt 32151523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 27922500 - 27922605
Alignment:
Q  186 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaag 285  Q
    |||||||||||||  | ||||  ||||||||| ||||||||||||||||||||   |||||| |||||||||||||||||| | |||||||  || ||||    
T  27922500 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaag 27922599  T
Q  286 ttcatt 291  Q
    ||||||    
T  27922600 ttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 17636485 - 17636400
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcga 294  Q
    ||||||||||||| | ||||||||| |||| || ||| |||||||||||||||||||| | |||||||  || |||||||||||||    
T  17636485 ttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattcga 17636400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 32151287 - 32151373
Alignment:
Q  180 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 266  Q
    |||||||| ||||||||||  | ||||  ||||||||||||| |||| |||||||||||  ||||||  ||||||||| ||||||||    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctc 32151373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 17628098 - 17628041
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 266  Q
    |||||||||||   ||||||| |||||||| ||| |||||||||||||||||||||||    
T  17628098 ttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctc 17628041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 34936277 - 34936184
Alignment:
Q  179 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagttt 272  Q
    |||| |||| |||||||||| || ||||  ||| |||  |||| |||| || |||||||| |||||||| |||||||| |||||||||||||||    
T  34936277 gtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttt 34936184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 21235573 - 21235653
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttca 289  Q
    |||| |||| ||| ||| |||| | ||||| || ||||| |||||||||||||||||| |||||||||  || ||||||||    
T  21235573 ttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 418
Target Start/End: Original strand, 1600448 - 1600646
Alignment:
Q  223 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttgaaaagtgggcca 322  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||| |||||  ||  || |||||||||||   |  |||  ||| ||||| | ||||| |    
T  1600448 agtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggcta 1600547  T
Q  323 aattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    | |||||||||||||| |||||| ||||   ||||| ||||||||||||||||||||||||||||  ||||  |||||||||||| |||||||||||||    
T  1600548 agttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgg 1600646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 209 - 418
Target Start/End: Complemental strand, 55908812 - 55908600
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattct 308  Q
    ||||||||| ||| |||| |||||||||||  | ||||||||||||||| |||||||||| ||  |||  ||||||||| |||| | |  | |  | |||    
T  55908812 ttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactct 55908713  T
Q  309 tgaaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagt 405  Q
    |||| ||| ||| |||||||||||||||| |||| |||||||   || || || |||||||||||||||||||||||||| |||  |||||||||||||     
T  55908712 tgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaaga 55908613  T
Q  406 agttgcaaattgg 418  Q
    | |||||||||||    
T  55908612 aattgcaaattgg 55908600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 418
Target Start/End: Complemental strand, 8187166 - 8186963
Alignment:
Q  218 cataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttgaaaagtg 317  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||| |  || |||||||||||  | | || | | ||||| | |||     
T  8187166 cataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagta 8187067  T
Q  318 ggccaaattcaaatgtctaatcttagaacatc---ttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaa 414  Q
    ||| || |||||||  ||||||| | ||||||   | |||| |||||||||||||||||||||||||| ||||||||  ||||||||||| |  ||||||    
T  8187066 ggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaa 8186967  T
Q  415 ttgg 418  Q
    ||||    
T  8186966 ttgg 8186963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 1519226 - 1519143
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  1519226 ttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 418
Target Start/End: Complemental strand, 1548508 - 1548298
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggt-gctcgattc 307  Q
    ||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||| |||||||||  || |||||||| || |  || |||  | |     
T  1548508 ttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcactt 1548409  T
Q  308 ttgaaaagtgggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtag 407  Q
    || ||    | || || ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| ||    
T  1548408 ttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcag 1548309  T
Q  408 ttgcaaattgg 418  Q
    |||||||||||    
T  1548308 ttgcaaattgg 1548298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 8184144 - 8184031
Alignment:
Q  179 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 278  Q
    ||||||||| ||||||||||  | ||||  |||||||  |||| ||||||  |||||||| ||||||||||||||||||||||||||||||||| |||      
T  8184144 gtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaac 8184045  T
Q  279 tttaaagttcattc 292  Q
    || |||||||||||    
T  8184044 ttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 553466 - 553574
Alignment:
Q  181 aacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatt 280  Q
    ||||||| ||||||||||  | ||||  |||| ||||||| ||||||||||||||||| |||||||  |||||||||||||||||| |||||| ||  ||    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactt 553565  T
Q  281 taaagttca 289  Q
    |||||||||    
T  553566 taaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 12121385 - 12121329
Alignment:
Q  362 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    ||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||    
T  12121385 aaataccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattgg 12121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 418
Target Start/End: Complemental strand, 1524599 - 1524358
Alignment:
Q  180 taacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagat 279  Q
    |||||||| |||||||||| || ||||   |||||||| ||| |||| |||||||||||  |||||| ||||||| ||||||||||| |  ||||||  |    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaact 1524500  T
Q  280 ttaaagttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcag 376  Q
    | ||||||||||| | |  | || ||| | ||| ||| ||| || |||||||| ||||  ||| |||||   |||||||  |||  ||||||||||||||    
T  1524499 tcaaagttcattccatgaagttctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcag 1524400  T
Q  377 atatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    ||| ||   ||||||| || |||||||| || ||||||||||    
T  1524399 atacgtatgagcaataacttaaatcaagcagctgcaaattgg 1524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 381
Target Start/End: Complemental strand, 1552881 - 1552676
Alignment:
Q  179 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 278  Q
    ||||||| | |||||||||| || || |  |||| |||||||  |||| |||||||| |||  ||||||||||||| |||||||| || |||||||||      
T  1552881 gtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaat 1552782  T
Q  279 tttaaagttcattcgagggtgct-cgattcttgaaaagt--gggccaaattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttca 375  Q
    || |||||||| || | |  ||| |  ||||  |||| |  |||| || |||||||||||||||||| |||||||||||| || |||||||||||| ||     
T  1552781 ttcaaagttcagtccaagtagcttcccttctataaaactatgggctaagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtct 1552682  T
Q  376 gatatg 381  Q
    ||||||    
T  1552681 gatatg 1552676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 659726 - 659791
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    |||||||||||||  ||| ||||| || ||  ||||||||||||||||||||||||||||||||||||    
T  659726 ttgagatcacata--gtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttggga 659791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 1489289 - 1489233
Alignment:
Q  362 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    |||||||||||||||||||||||||||||||  |||||| ||| | |||||||||||    
T  1489289 aaataccttcttcagatatgttatagcaataagtcaaattaagcaattgcaaattgg 1489233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 532204 - 532287
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    ||||| ||||||||||   ||||||||||||  |||||| ||||||||||||||||||||| |||||   || |||||||||||    
T  532204 ttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattc 532287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 7225851 - 7225755
Alignment:
Q  325 ttcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    |||||||||||||||||| |||||||   ||||| ||||||||  ||||||||| | ||||||| | || ||||||||||||| || | ||||||||    
T  7225851 ttcaaatgtctaatcttacaacatctccgtaaaacttgacaaaccccttcttcatacatgttatgggaagagctcaaatcaagcagctccaaattgg 7225755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 12121527 - 12121457
Alignment:
Q  223 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcg 293  Q
    |||| |||||||||||   |||||| ||||||||||||||| ||||||||||||  || ||||||||||||    
T  12121527 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcg 12121457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 12116645 - 12116600
Alignment:
Q  223 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctcta 268  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||    
T  12116645 agtgattcatcatcaacacttgtatgtgacaagttcaacacctcta 12116600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 558486 - 558578
Alignment:
Q  182 acagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 274  Q
    |||||| |||||||||| || ||||  ||||||||||||  |||||||||||||||||   |||   |||||||||||||||| |||| ||||    
T  558486 acagttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacccctaggttgg 558578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 1513516 - 1513408
Alignment:
Q  184 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaa 283  Q
    |||| |||||||||| || |||   ||||||| || || |||| |||||||||||   |||||  ||||||||||||||| ||||||||||||  || ||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  284 agttcattc 292  Q
    |||||||||    
T  1513416 agttcattc 1513408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 1545798 - 1545870
Alignment:
Q  219 ataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 291  Q
    |||||||| ||||||||||| |||||||    |||||||||||||||| ||||| |||  |||||||||||||    
T  1545798 ataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 7307889 - 7307957
Alignment:
Q  223 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 291  Q
    |||||||||||||||| |  ||||| |||||||||||| ||||| | |||||||  |||||||||||||    
T  7307889 agtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 558630 - 558711
Alignment:
Q  326 tcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaag 404  Q
    ||||||||||||| |||||||||   |||||||  ||||||||||||| ||| ||||| ||||  |||||| ||||||||||    
T  558630 tcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctttttctgatattttatgacaatagatcaaatcaag 558711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 1508112 - 1508021
Alignment:
Q  184 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggg 275  Q
    |||| |||||||||| || |||   ||||||| ||| | |||| |||||||||||   | |||||||||||||||||||| |||||||||||    
T  1508112 agttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 55505192 - 55505109
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    ||||| |||||||||||| | |||| ||||   |||||| ||||||||||||||||||||||| |||   | ||||||||||||    
T  55505192 ttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattc 55505109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 570336 - 570430
Alignment:
Q  179 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttg 273  Q
    ||||||||| |||||||||  || ||||  |||| |||| ||| ||| |||| | ||||| || ||||| |||||||||||||||||| ||||||    
T  570336 gtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttg 570430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 1489412 - 1489362
Alignment:
Q  242 ttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    |||||| ||||||||||||||| ||||||||||||  || |||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 1489362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 1537818 - 1537768
Alignment:
Q  242 ttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    |||||| ||||||||||||||| ||||||||||||  || |||||||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 1537768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 532349 - 532390
Alignment:
Q  357 ttgacaaataccttcttcagatatgttatagcaatagctcaa 398  Q
    |||| |||||||||||| |||||||||||| |||||||||||    
T  532349 ttgataaataccttctttagatatgttataacaatagctcaa 532390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 1505039 - 1504983
Alignment:
Q  362 aaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    |||||||||||||||||||||||| |||||| || |||| ||  | |||||||||||    
T  1505039 aaataccttcttcagatatgttatggcaataactaaaattaaccaattgcaaattgg 1504983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 418
Target Start/End: Complemental strand, 706 - 496
Alignment:
Q  211 gagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattcgagggtgctcgattcttg 310  Q
    ||||||| ||| |||| ||||||||| |  ||||||||||||||||| |||||||||| ||  |||  ||||||||| |||| | |  | |  | |||||    
T  706 gagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttg 607  T
Q  311 aaaagtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtag 407  Q
    || ||| ||| |||||||||||||||  |||| |||||||   || || || |||||||||||||||||||||||||| |||  ||||||||||||| |     
T  606 aacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaa 507  T
Q  408 ttgcaaattgg 418  Q
    ||| |||||||    
T  506 ttgtaaattgg 496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 418
Target Start/End: Original strand, 32267467 - 32267699
Alignment:
Q  186 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaag 285  Q
    |||||||||||||  | ||||  ||||||||| |||||||||||||||||||| | |||| |||||||||||||| ||||| | |||||||  || ||||    
T  32267467 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaag 32267566  T
Q  286 ttcattcgagggtgctcgattcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgt 382  Q
    ||||||    | | |   | | ||||| | ||||  || |||||||||||||| ||| |||||   ||||||||||||   ||||||||||||||||||     
T  32267567 ttcatttctagtttc---actgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgc 32267663  T
Q  383 tatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
     | | |||| |||||||||||| || ||||||||||    
T  32267664 gacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 41901619 - 41901552
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||    
T  41901619 ttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttggga 41901552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 41889638 - 41889556
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 291  Q
    ||||||||  |||||||| ||||||||||| | |||||| ||| |||||||||||||| | |||||||  |||||||||||||    
T  41889638 ttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 37937902 - 37937969
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    ||||||| ||||| |||| || |||||||||||||||||||| ||||| ||||||||| || ||||||    
T  37937902 ttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttggga 37937969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 38267640 - 38267573
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    ||||||| ||||| ||||  |||||||||| ||||||||||| ||||| ||||||||| || ||||||    
T  38267640 ttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttggga 38267573  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 51113895 - 51113782
Alignment:
Q  179 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggaga 278  Q
    ||||||||| ||||||||||  | ||||  | ||||||||||| |||| |||||||||||   |||||| ||||||||  |||||||| ||||||||||     
T  51113895 gtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagc 51113796  T
Q  279 tttaaagttcattc 292  Q
    || |||||||||||    
T  51113795 ttcaaagttcattc 51113782  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 416
Target Start/End: Complemental strand, 514707 - 514602
Alignment:
Q  314 agtgggccaaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttg 410  Q
    ||||||| || |||||||| ||||||||||| |||||   ||||| |||||| |||| ||  |||||||||||||  |||||||||||||||| ||| ||    
T  514707 agtgggctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctcaaatcaattagctg 514608  T
Q  411 caaatt 416  Q
    ||||||    
T  514607 caaatt 514602  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 51120997 - 51120894
Alignment:
Q  189 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttc 288  Q
    |||||||||| || ||||  ||||||| ||||| |||  ||||||||||| ||||||||| ||||||||||||||||| | |||| ||  || |||||||    
T  51120997 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 51120898  T
Q  289 attc 292  Q
    ||||    
T  51120897 attc 51120894  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 27005856 - 27005791
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 274  Q
    ||||||| |||||||||| |  || ||||||||||||||||||||||||||| ||||| |||||||    
T  27005856 ttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 33094011 - 33093947
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttg 273  Q
    |||||||| |||||||| |||||||||||| || ||  | |||||||||||| ||||||||||||    
T  33094011 ttgagatcgcataaagtacttcatcatcaactcatgactttgacaagttcaaaacctctagtttg 33093947  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 1657375 - 1657472
Alignment:
Q  322 aaattcaaatgtctaatcttagaacatct---taaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaatt 416  Q
    ||||||||||||||||| ||| ||||| |   |||||  |||  ||||||||||||||||||||  | ||||| ||||||||||||||| || |||||    
T  1657375 aaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaagtagctgtaaatt 1657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 37580905 - 37580839
Alignment:
Q  208 attgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 274  Q
    |||||||||||||| | | ||| ||||||||||||||  | |||||||||||| ||||| |||||||    
T  37580905 attgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttgg 37580839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 36811111 - 36811046
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 274  Q
    |||||||  |||| ||||||  || ||||||||||| ||| ||||||||||||||||| |||||||    
T  36811111 ttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtttgg 36811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 37587638 - 37587573
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgg 274  Q
    |||||||| |||| | | ||| ||||||||||||||  |||||||||||||| ||||| |||||||    
T  37587638 ttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttgg 37587573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 6432179 - 6432259
Alignment:
Q  212 agatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||||||  || ||||||  || |||||||||||    
T  6432179 agatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattc 6432259  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 7119269 - 7119381
Alignment:
Q  306 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 402  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||   ||||||| |||||||||||   ||||||||||||||| ||||    ||||||||    
T  7119269 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatca 7119365  T
Q  403 agtagttgcaaattgg 418  Q
    || ||||| |||||||    
T  7119366 agaagttgtaaattgg 7119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 7131747 - 7131859
Alignment:
Q  306 tcttgaaaagtgggccaaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatca 402  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||   ||||||| |||||||||||   ||||||||||||||| ||||    ||||||||    
T  7131747 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatca 7131843  T
Q  403 agtagttgcaaattgg 418  Q
    || ||||| |||||||    
T  7131844 agaagttgtaaattgg 7131859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 28935078 - 28935131
Alignment:
Q  223 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  28935078 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttgggga 28935131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 6410021 - 6410104
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcattc 292  Q
    |||||||||||||||| | |||||||||||  ||||||| |||| ||||||||||||  || ||||||  || |||||||||||    
T  6410021 ttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattc 6410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 6394879 - 6394936
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 266  Q
    ||||||||||| |||| | |||||||||||  ||||||| ||||||||||||||||||    
T  6394879 ttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctc 6394936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 6402850 - 6402942
Alignment:
Q  184 agtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    |||||||||||||||  | || |  ||||||||||||| |||| |||||||||||   | |||| ||||||||||||||| ||||||| ||||    
T  6402850 agtttcaaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttgggga 6402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 12102281 - 12102361
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttca 289  Q
    |||| |||| ||| ||| |||| | ||||| || |||||||||||||||||||||||| |||||||||  || ||||||||    
T  12102281 ttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 6585321 - 6585264
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctc 266  Q
    ||||||||||||| |||| |||||||||||   |||||| |||||||||||| |||||    
T  6585321 ttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctc 6585264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 7994266 - 7994206
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctag 269  Q
    ||||||||||||| |||| ||| |||| ||  ||||||| ||||| |||||||||||||||    
T  7994266 ttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctag 7994206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 19468583 - 19468516
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 276  Q
    |||||||||||||||||| |||||||||||   |||||| |||||| ||||||||||| || ||||||    
T  19468583 ttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttggga 19468516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 9581199 - 9581295
Alignment:
Q  325 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    |||||||||||||||| | ||||||||   |||| |||||||||||||  || |||||||||| |||||| || || |||||| || ||||||||||    
T  9581199 ttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgg 9581295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 9586767 - 9586863
Alignment:
Q  325 ttcaaatgtctaatcttagaacatctt---aaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 418  Q
    |||||||||||||||| | ||||||||   |||| |||||||||||||  || |||||||||| |||||| || || |||||| || ||||||||||    
T  9586767 ttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaattgg 9586863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 52082596 - 52082678
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagatttaaagttcatt 291  Q
    ||||||||||||| | || ||||||||||||| |||| | |||||||||||||||||| | ||||| |  || ||||||||||    
T  52082596 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 9586653 - 9586720
Alignment:
Q  208 attgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggg 275  Q
    |||||| |||||||||||| |||||||| ||    ||||| ||||||||||||||||||||| |||||    
T  9586653 attgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggg 9586720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 9581084 - 9581152
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaa--ttcttgtatgtgacaagttcaacacctctagtttggg 275  Q
    |||||||||||||||| | |||||||| ||  || |||||  ||||||||||||||||||||| |||||    
T  9581084 ttgagatcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagcttggg 9581152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 18724440 - 18724358
Alignment:
Q  209 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagtt----caacacctctagtttgggagatttaaagtt 287  Q
    |||||||| |||| ||| ||| ||||||||||||||  |||||||||||    ||||||||||||||||| || || ||||||    
T  18724440 ttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaaccaacacctctagtttggaagcttcaaagtt 18724358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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