View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17036_low_7 (Length: 397)
Name: NF17036_low_7
Description: NF17036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17036_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 38025983 - 38025612
Alignment:
| Q |
11 |
cagagatttgttgcataattctctgttatatcctgattaggtttgtacaaatctttatatgttgtgcaggaaagtattcataacttggtaggaaatgttt |
110 |
Q |
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| T |
38025983 |
cagagatttgttgcataattctttgttatatcctgattaggtttgtacaaatctttatatgttgtgcaggaaagtattcataacttggtaggaaatgttg |
38025884 |
T |
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| Q |
111 |
gtctagccaattagctttccatcacacgaaacttggataacaaccaaaatataacttgaatttatatcctccttttcaagtctcttgcaatggaccacat |
210 |
Q |
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| T |
38025883 |
gtctagccaattagctttccatcacacgaaacttggataacaaccaaaatataacttgaatttatatcctccttttcaagtctcttgcaatggaccacat |
38025784 |
T |
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| Q |
211 |
acattgttgtcaatgtctgctaaatcaattttgtaggccacctatagtttcgctatcagaaattgttagcctttgtaacaaccgagttttttaatgtgac |
310 |
Q |
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| T |
38025783 |
acattgttgtcaatgtctgctaaatcaattttgtaggccacctatagtttcgctatcagaaattgttagcctttgtaacaaccgagttttttaatgtgac |
38025684 |
T |
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| Q |
311 |
atatatttaattattgtctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatg |
382 |
Q |
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| T |
38025683 |
atatatttaattattgtctcaagtcttgagcgatcattcaatctttgagaaagacctcttgacagtatcatg |
38025612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 205 - 386
Target Start/End: Complemental strand, 38040917 - 38040727
Alignment:
| Q |
205 |
ccacatacattgttgtcaatgtctgctaaatcaattttgtaggccacctatagtttcgctatcagaaattgttagccttt-------gtaacaaccgagt |
297 |
Q |
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| T |
38040917 |
ccacaaacattgttgtctatgtctgctaaattaattttgtaggccgcctacagttttgttatcagaaatttttagcctttgtaaattgtaacgaccagct |
38040818 |
T |
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| Q |
298 |
tttttaatgt--gacatatatttaattattgtctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatgtgat |
386 |
Q |
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| T |
38040817 |
ttcttaatgtgggacatatatttaattattgtctcaagtcttgagcaatcattcaatctttgataaagaccttatgagagtatcatctgat |
38040727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 38029596 - 38029518
Alignment:
| Q |
308 |
gacatatatttaattattgtctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatgtgat |
386 |
Q |
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| T |
38029596 |
gacatatatttaattattgtctcaagtcttaagcaatcattcaatctttgaaaaagacctcttgagagtatcatgtgat |
38029518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 386
Target Start/End: Complemental strand, 38037712 - 38037536
Alignment:
| Q |
210 |
tacattgttgtcaatgtctgctaaatcaattttgtaggccacctatagtttcgctatcagaaattgttagcctttgtaacaaccgagttttttaatgtg- |
308 |
Q |
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| T |
38037712 |
tacattgctgtccatgtctgctaaattaattttgtaggacacctacagttttgttataaactttttttaacctttgtaataaccaagttcgt-aatgtgc |
38037614 |
T |
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| Q |
309 |
-acatatatttaattattgtctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatgtgat |
386 |
Q |
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| T |
38037613 |
aacatacatttaattactctctcaagt-tcaagcaatcattcaatctttgagaaagacctcttgagagcatcatgtgat |
38037536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 50907975 - 50908093
Alignment:
| Q |
175 |
tatcctccttttcaagtctcttgcaatggaccacatacattgttgtcaatgtctgctaaatcaattttgtaggccacctatagtttcgctatcagaaatt |
274 |
Q |
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| T |
50907975 |
tatcctctttttgcagtcccttacaattgaccacaatcattgttgtctatgtcagctaaattaattttgtaggccacctacagttttgttatcaaatttt |
50908074 |
T |
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| Q |
275 |
gttagcctttgtaacaacc |
293 |
Q |
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| T |
50908075 |
tttagcctttgttacaacc |
50908093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 50912592 - 50912514
Alignment:
| Q |
308 |
gacatatatttaattattgtctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatgtgat |
386 |
Q |
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| T |
50912592 |
gacatatatttaattgctctctgaagtgttaagcgataattcaatctttgagaaatacctctagacaatatcatgtgat |
50912514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 55084135 - 55084194
Alignment:
| Q |
327 |
tctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatgtgat |
386 |
Q |
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|||||| |||| ||| ||||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
55084135 |
tctcaaatcttaagcaatcattcaatcttaaagaaagacctctagacagtttcatgtgat |
55084194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 21605587 - 21605509
Alignment:
| Q |
308 |
gacatatatttaattattgtctcaagtcttgagcgatcattcaatcttggagaaagacctcttgacagtatcatgtgat |
386 |
Q |
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| T |
21605587 |
gacatatatttaattattgtctcaagtcttaagcaatcattgaatctttgagaaagacctcttgagagtatcatgtgat |
21605509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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