View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17037_high_2 (Length: 531)
Name: NF17037_high_2
Description: NF17037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17037_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 35850811 - 35850309
Alignment:
| Q |
19 |
gattctagggattcctgttctgatgctgagacgccggttgaattgcctgtggcattagaattgccgccaccgttagagttgccgccgtcttctggaacta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850811 |
gattctagggattcctgttctgatgctgagacgccggttgaattgcctgtggcattagaattgccgccaccgttagagttgccgccgtcttctggaacta |
35850712 |
T |
|
| Q |
119 |
ttggtgtgccagagaagtatgtttcgtacttgttttcggtatatggattcttacgctcgttcagtattcgattgtttctttatccgtttagtttggatga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35850711 |
ttggtgtgccagagaagtatgtttcgtacttgttttcggtatatggattcttacgctcgttcagtattcaattgtttctttatccgtttagtttggatga |
35850612 |
T |
|
| Q |
219 |
tttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgctgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850611 |
tttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgctgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgca |
35850512 |
T |
|
| Q |
319 |
tttgagggatcgaagattgcatcgagatgccttaggtattatgcttctacctacttaggttaattttttatttatatactgttgactgttttgtttgcat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850511 |
tttgagggatcgaagattgcatcgagatgcctaaggtattatgcttctacctacttaggttaattttttatttatatactgttgactgttttgtttgcat |
35850412 |
T |
|
| Q |
419 |
tagagctttgaaccctatttcattaaaaacaggacatcaagtaatacacacatacatacgtgtttgttttgattaacccatatttccttggtactcccct |
518 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35850411 |
tagagctttgaaccctattccattaaaaacaggacatcaagtaatacacacatacatacgtgtgtgttttgattaacccatatttccttggtactcccct |
35850312 |
T |
|
| Q |
519 |
atg |
521 |
Q |
| |
|
||| |
|
|
| T |
35850311 |
atg |
35850309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 35841194 - 35840766
Alignment:
| Q |
19 |
gattctagggattcctgttctgatgctgagacgccggttgaattgcctgtggcattagaattgccgccaccgttagagttgccgccgtcttctggaacta |
118 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||||||||||| ||||||| ||||||| |||| || || ||||| ||||||||||| ||||||| |
|
|
| T |
35841194 |
gattctagggatttgtgttcggatgctgagataccggttgaattgctggtggcatcagaattgtcgccgcctttggagttaccgccgtcttcaggaacta |
35841095 |
T |
|
| Q |
119 |
ttggtgtgccagagaagtatgtttcgtacttgttttcggtatatggattcttacgctcgttcagtattcgattgtttctttatccgtttagtttggatga |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35841094 |
ttggtgtgccggagaagtatgtttcgtacttgttttcggtatatggattcttacgatcattcagtattcgattgtttctttatccgtttagtttggatga |
35840995 |
T |
|
| Q |
219 |
tttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgctgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgca |
318 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35840994 |
tttcgtcggggctcttaactgtcgagttccaaatacgttggttgatgctgttcataattctttaatgcgtgctctgagacgtcatcttgaacatcttgca |
35840895 |
T |
|
| Q |
319 |
tttgagggatcgaagattgcatcgagatgccttaggtattatgcttctacctacttaggttaattttttatttatatactgttgactgttttgtttgcat |
418 |
Q |
| |
|
| ||||||||| | | ||||||| |||||||||||||||||||||| ||| || |||||||||| | || |||| ||||||||||||||| | ||| |
|
|
| T |
35840894 |
tctgagggatcaacggttgcatctcaatgccttaggtattatgcttcttcctcctcaggttaatttatgat---tatattgttgactgttttgtgtacat |
35840798 |
T |
|
| Q |
419 |
tagagctttgaaccctatttcattaaaaacag |
450 |
Q |
| |
|
||||||| | ||| ||||| |||||||||||| |
|
|
| T |
35840797 |
tagagctctaaactctattccattaaaaacag |
35840766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 464 - 521
Target Start/End: Complemental strand, 44384843 - 44384786
Alignment:
| Q |
464 |
acacacatacatacgtgtttgttttgattaacccatatttccttggtactcccctatg |
521 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
44384843 |
acacacatacatacgtgtgtgttttgatcaacccatattctcttggtactcccctatg |
44384786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University