View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17037_high_6 (Length: 367)
Name: NF17037_high_6
Description: NF17037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17037_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 51993137 - 51992796
Alignment:
| Q |
19 |
gaagcacatgaaactatgagaaaagactaaaattgaggggctgctataaagtgcatcctagtgttgttggctcgatgatattttcacggccatcatttgt |
118 |
Q |
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| T |
51993137 |
gaagcacatgaaactatgagaaaagactaaaattgaggggctgctataaagtgcatcctagtgttgttggctcgatgatattttcacggccatcatttgt |
51993038 |
T |
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| Q |
119 |
tccaccttgctatcattccattgacatagagaaagaactcttcttgagt----catgtatgtcttctactctgctgaagtttggattctaaaatgtaaaa |
214 |
Q |
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| T |
51993037 |
tccaccttgctatcattccattgacatagagaaagaactcttcttgagtcatgcatgtatgtcttctactctgctgaagtttgaattctaaaatgtaaaa |
51992938 |
T |
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| Q |
215 |
tgttttgtttttcataatagtttccctcgttgat---tggtagatatgtttcatgttgaattttagatttattacattgtaagaagagatttattttaga |
311 |
Q |
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| T |
51992937 |
tgttttgttttttataatagtttcccttgttgattgctggtagatatgtttcatgttgaattttagatttattacattgtaagaagagatttattttaga |
51992838 |
T |
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| Q |
312 |
actgacatggtacttttcagggtagtacactgtacacctatg |
353 |
Q |
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| T |
51992837 |
actgacatggtacttttcagggtagtacactgtacacctatg |
51992796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 8187284 - 8187344
Alignment:
| Q |
52 |
tgaggggctgctataaagtgcatcctagtgttgttggctcgatgatattttcacggccatc |
112 |
Q |
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| T |
8187284 |
tgaggcgctgctataatgtgcatcctgatgttgttgactcgatgatattttcaaggccatc |
8187344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 55505310 - 55505361
Alignment:
| Q |
64 |
ataaagtgcatcctagtgttgttggctcgatgatattttcacggccatcatt |
115 |
Q |
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| T |
55505310 |
ataaagtgcatactagtgttgttgactcaatggtattttcaaggccatcatt |
55505361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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