View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17037_low_1 (Length: 533)
Name: NF17037_low_1
Description: NF17037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17037_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 367
Target Start/End: Complemental strand, 2113001 - 2112646
Alignment:
| Q |
6 |
tggacatcatcatgcacaaaccttggctgctcaagagacattggctaggttggtgagaatgaggagtaagatatgaacatgaacatgaacatgcatgttt |
105 |
Q |
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| T |
2113001 |
tggacataaccatgcacaaaccttggctgctcaagagacattggcaaggttggtgagaatgaggagtaagatatgaacatgaacatg------catgttt |
2112908 |
T |
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| Q |
106 |
tgttacaccatttgtcttgttcatttacatttgaacttcatacatgacaccacttgtagtggagatgtaatgttactatggtaatgtagattgaataatg |
205 |
Q |
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| T |
2112907 |
tgttacaccatttgtcttgttcatttacatttaaacttcatacatgacaccacttgtagtggagatgtaatgttactatggtaatgtagattgaataatg |
2112808 |
T |
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| Q |
206 |
atcaaatttcgttcttgaaaccgtcttgacttggtctctgaatttatgtatagcttcaaacctaaacttgcttaatctgaaacttttaaacaataatttt |
305 |
Q |
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| T |
2112807 |
atcaaatttcgttcttgaaaccgtcttgacttggtctctgaatttatgtatagcttcaaacctaaacttgcttaatctgaaacttttaaacaataatttt |
2112708 |
T |
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| Q |
306 |
tcagggaaactaccacaaagttagtaaagtgagttcagtgaatcgtttaaaacaagagttca |
367 |
Q |
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| T |
2112707 |
tcagggaaactaccacaaagttagtaaagtgagttcagtgaatcgtttaaaacaagagttca |
2112646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 433 - 517
Target Start/End: Complemental strand, 2112626 - 2112542
Alignment:
| Q |
433 |
gacgaagtaacaactaagtttataaagaaaataatttctcactcatttgttgaaaataatttattactaactattacaagaacat |
517 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2112626 |
gacgaagtaacaactaagtttataaagagaataatttctcactcatttgttgaaaataatttattactaactattacaagaacat |
2112542 |
T |
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