View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17037_low_3 (Length: 445)

Name: NF17037_low_3
Description: NF17037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17037_low_3
NF17037_low_3
[»] chr5 (3 HSPs)
chr5 (11-390)||(19586889-19587267)
chr5 (38-426)||(19582201-19582596)
chr5 (38-426)||(19590989-19591384)
[»] chr8 (1 HSPs)
chr8 (123-191)||(20789355-20789423)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 19587267 - 19586889
Alignment:
Q  11 taatactccaaagtccaaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19587267 taatactccaaagtccaaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcaaactattgcatatgagtactttaat 19587168  T
Q  111 taaaatagtatata--ctaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatgg 208  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19587167 taaaatagtatatatactaattaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataatgtaaatttcaagaactcatgcatgg 19587068  T
Q  209 agattaattaaactttaactatcaccttaataacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19587067 agattaattaaactttaactatcaccttaataacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaa 19586968  T
Q  309 attagccacaattaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 390  Q
       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586967 ---agccagaattaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac 19586889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 38 - 426
Target Start/End: Original strand, 19582201 - 19582596
Alignment:
Q  38 gagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaa 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||            |||||||||||||| |||  |||||||||||||    
T  19582201 gagttccagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaa 19582287  T
Q  138 cactgcat---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatg----gagattaattaaactttaactat 230  Q
    ||||| ||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19582288 cactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactat 19582387  T
Q  231 caccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaa 319  Q
    |||||||||           ||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||   |||| ||    
T  19582388 caccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaacttgatcaatatataaatcagaaa---gccaaaa 19582484  T
Q  320 ttaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac-----tcgggagtggtatttgcatctatc 414  Q
      |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     ||||  ||||||||||||||| ||    
T  19582485 caaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactactaaccggactcggaggtggtatttgcatctgtc 19582584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 38 - 426
Target Start/End: Complemental strand, 19591384 - 19590989
Alignment:
Q  38 gagttccagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaa 137  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||            |||||||||||||| |||  |||||||||||||    
T  19591384 gagttccagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaa 19591298  T
Q  138 cactgcat---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatg----gagattaattaaactttaactat 230  Q
    ||||| ||   ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||    
T  19591297 cactgaataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactat 19591198  T
Q  231 caccttaat-----------aacatgaaattaaattctcttcattaagattatgaaattaattaaacttgatcaatatataaatcagaaattagccacaa 319  Q
    |||||||||           ||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||   |||| ||    
T  19591197 caccttaatttcatttcaataacatgaaagtaaattctcttcattaagattctagaattaattaaacttgatcaatatataaatcagaaa---gccaaaa 19591101  T
Q  320 ttaagtatcccttaattaaagaattcatgaagaatgttctgatgagtccaatgatgatgaaaacaactaac-----tcgggagtggtatttgcatctatc 414  Q
      |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     ||||  ||||||||||||||| ||    
T  19591100 caaagtatcccttaataaaagaattcatcaagaatgttctgatgagtccaatgatgatgaaaactactaaccggactcggaggtggtatttgcatctgtc 19591001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 20789423 - 20789355
Alignment:
Q  123 tactaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaattt 191  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  20789423 tactaataaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataacgtaaattt 20789355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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