View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17037_low_4 (Length: 436)
Name: NF17037_low_4
Description: NF17037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17037_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 4483375 - 4483781
Alignment:
| Q |
18 |
gttcgaaatttaaatttagcatgtactagtattatttttgcacctaattgattgaacaatcgatatgtgaattttacctgagataccagcagtacaataa |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
4483375 |
gttcgaaatttaaatttagcatgtaccagtattatttttgcacctaattgattgaacaattggtatgtgaattttacctgagataccagcagtacaataa |
4483474 |
T |
|
| Q |
118 |
acaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactggatttattcacacccataacagttaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4483475 |
acaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactggatttattcacacccatcacagttaaaa |
4483574 |
T |
|
| Q |
218 |
ccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataactctcgatgctcaaataaaggtgctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
4483575 |
ccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataactctccatgctcaaataaaggcgctga |
4483674 |
T |
|
| Q |
318 |
aggtgcctctttatagtctttagcatcattgtcttgagattgagcagcagttcctattggttggttttctctatacttgtttgctcctactcttacatct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483675 |
aggtgcctctttatagtctttagcatcattgtcttgagattgagcagcagttcctattggttggttttctctatacttgtttgctcctactcttacatct |
4483774 |
T |
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| Q |
418 |
tcatctc |
424 |
Q |
| |
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||||||| |
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| T |
4483775 |
tcatctc |
4483781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 335
Target Start/End: Original strand, 2650083 - 2650327
Alignment:
| Q |
91 |
ttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactgg |
190 |
Q |
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|||||||| || |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| |||||| |||| |||||| | |
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| T |
2650083 |
ttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtg |
2650182 |
T |
|
| Q |
191 |
atttattcacacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataa |
290 |
Q |
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| T |
2650183 |
acctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatgacttcaa |
2650282 |
T |
|
| Q |
291 |
ctctcgatgctcaaataaaggtgctgaaggtgcctctttatagtc |
335 |
Q |
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| T |
2650283 |
ctctcctggctcaaacaaaggtgctggtggtgcttctttgtagtc |
2650327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 35230845 - 35230916
Alignment:
| Q |
92 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaa |
163 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
35230845 |
tacctgagattccagcagtacagtaaacaagagcaaagatcatgccaccaaaagcccaagcaattccttgaa |
35230916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 35230952 - 35231037
Alignment:
| Q |
199 |
acacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatga |
284 |
Q |
| |
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|||||||||||||| ||||| || ||||||||||| | || ||||| || |||||||| ||||| || || |||||||||||||| |
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| T |
35230952 |
acacccataacagtcaaaacagtgatataaagaaaaaggaaagtagcaacgaactcagctatcccagctctgtagaaagaccatga |
35231037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 31460746 - 31460824
Alignment:
| Q |
92 |
tacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaac |
170 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||| |||||||||||| |||| |||||| |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattccttgaataccaac |
31460824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 40208071 - 40208111
Alignment:
| Q |
130 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
170 |
Q |
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| T |
40208071 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
40208111 |
T |
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