View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17038_high_3 (Length: 289)

Name: NF17038_high_3
Description: NF17038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17038_high_3
NF17038_high_3
[»] chr1 (27 HSPs)
chr1 (30-285)||(30476892-30477145)
chr1 (3-113)||(28220665-28220776)
chr1 (3-113)||(28223860-28223971)
chr1 (2-63)||(11348171-11348232)
chr1 (1-113)||(37033723-37033836)
chr1 (1-113)||(44454779-44454891)
chr1 (2-155)||(4553085-4553239)
chr1 (1-116)||(193010-193126)
chr1 (8-60)||(26644469-26644521)
chr1 (9-155)||(31658816-31658962)
chr1 (8-113)||(37070244-37070349)
chr1 (2-63)||(10924893-10924954)
chr1 (1-56)||(3189027-3189082)
chr1 (1-56)||(3197844-3197899)
chr1 (1-56)||(3206662-3206717)
chr1 (8-113)||(13598877-13598982)
chr1 (2-56)||(20762348-20762402)
chr1 (23-113)||(29652307-29652396)
chr1 (9-63)||(49918019-49918073)
chr1 (9-61)||(3156539-3156591)
chr1 (8-60)||(19361008-19361060)
chr1 (8-60)||(19365864-19365916)
chr1 (3-63)||(37879547-37879607)
chr1 (1-63)||(1833191-1833253)
chr1 (8-46)||(3282183-3282221)
chr1 (1-46)||(13659736-13659781)
chr1 (10-46)||(9986895-9986931)
[»] chr4 (44 HSPs)
chr4 (1-156)||(12745853-12746007)
chr4 (1-156)||(9927897-9928052)
chr4 (1-155)||(12739975-12740128)
chr4 (1-155)||(12748181-12748334)
chr4 (9-156)||(3754590-3754736)
chr4 (1-116)||(26363664-26363779)
chr4 (2-116)||(54882438-54882553)
chr4 (2-114)||(5429298-5429411)
chr4 (1-113)||(6655357-6655470)
chr4 (8-113)||(16628388-16628492)
chr4 (1-143)||(34570850-34570983)
chr4 (8-113)||(3778025-3778130)
chr4 (1-56)||(52095797-52095852)
chr4 (9-63)||(6742981-6743035)
chr4 (2-63)||(26176061-26176122)
chr4 (1-70)||(40630430-40630498)
chr4 (1-64)||(5370512-5370575)
chr4 (1-63)||(2209172-2209234)
chr4 (8-113)||(36314746-36314851)
chr4 (8-113)||(36328955-36329060)
chr4 (1-63)||(37740296-37740358)
chr4 (1-63)||(46570180-46570242)
chr4 (9-70)||(3909760-3909821)
chr4 (8-113)||(16622809-16622913)
chr4 (115-156)||(29254141-29254182)
chr4 (8-60)||(5148154-5148206)
chr4 (8-75)||(5268752-5268820)
chr4 (8-60)||(13992731-13992783)
chr4 (8-113)||(25861548-25861654)
chr4 (1-56)||(56179061-56179116)
chr4 (8-46)||(8689079-8689117)
chr4 (8-46)||(27417612-27417650)
chr4 (2-52)||(35661902-35661952)
chr4 (1-70)||(50674500-50674568)
chr4 (8-111)||(54867655-54867758)
chr4 (8-46)||(5143737-5143775)
chr4 (8-46)||(5396273-5396311)
chr4 (10-113)||(10047843-10047947)
chr4 (10-60)||(31495756-31495806)
chr4 (8-46)||(41639034-41639072)
chr4 (1-70)||(36994224-36994292)
chr4 (8-113)||(38151953-38152057)
chr4 (9-113)||(18377816-18377920)
chr4 (8-60)||(28468073-28468125)
[»] chr7 (33 HSPs)
chr7 (2-156)||(4585738-4585892)
chr7 (1-138)||(47674379-47674517)
chr7 (1-138)||(47676572-47676710)
chr7 (1-156)||(14070270-14070424)
chr7 (1-156)||(14380298-14380452)
chr7 (1-113)||(27347543-27347655)
chr7 (30-116)||(34311285-34311371)
chr7 (1-86)||(32358490-32358575)
chr7 (1-113)||(2389694-2389806)
chr7 (2-109)||(18126268-18126375)
chr7 (1-63)||(4538987-4539049)
chr7 (1-56)||(23554716-23554771)
chr7 (7-86)||(49092167-49092245)
chr7 (2-63)||(6360567-6360628)
chr7 (6-115)||(43863878-43863988)
chr7 (8-113)||(33331965-33332071)
chr7 (1-63)||(48599932-48599994)
chr7 (8-60)||(25767398-25767450)
chr7 (8-63)||(4796235-4796290)
chr7 (8-113)||(2647213-2647318)
chr7 (2-56)||(4178451-4178505)
chr7 (1-63)||(48489100-48489162)
chr7 (8-113)||(79867-79970)
chr7 (11-60)||(24789522-24789571)
chr7 (8-60)||(2479812-2479864)
chr7 (8-60)||(21983719-21983771)
chr7 (9-56)||(19495646-19495693)
chr7 (11-60)||(1532999-1533048)
chr7 (1-46)||(30026435-30026480)
chr7 (8-60)||(21646495-21646547)
chr7 (12-60)||(21811834-21811882)
chr7 (8-60)||(21989384-21989435)
chr7 (8-60)||(47264119-47264171)
[»] chr5 (23 HSPs)
chr5 (1-155)||(32636402-32636555)
chr5 (1-117)||(42428854-42428971)
chr5 (2-155)||(37438724-37438876)
chr5 (1-117)||(42426671-42426788)
chr5 (10-140)||(16651067-16651198)
chr5 (9-86)||(212991-213068)
chr5 (2-115)||(40146667-40146780)
chr5 (8-113)||(11916487-11916592)
chr5 (2-86)||(5057478-5057562)
chr5 (10-155)||(28751027-28751174)
chr5 (8-113)||(12083693-12083798)
chr5 (8-113)||(14520706-14520811)
chr5 (8-60)||(9352903-9352955)
chr5 (1-52)||(30683344-30683395)
chr5 (1-117)||(13487820-13487935)
chr5 (8-60)||(24136336-24136388)
chr5 (10-60)||(9789663-9789713)
chr5 (30-68)||(11181412-11181450)
chr5 (10-60)||(18442087-18442137)
chr5 (9-46)||(30683269-30683306)
chr5 (1-46)||(38746457-38746502)
chr5 (128-156)||(19634111-19634139)
chr5 (12-60)||(28807171-28807219)
[»] chr3 (46 HSPs)
chr3 (9-138)||(29812657-29812787)
chr3 (1-136)||(29810464-29810600)
chr3 (2-116)||(31340697-31340812)
chr3 (6-113)||(51398445-51398553)
chr3 (1-114)||(36018262-36018376)
chr3 (1-114)||(4569352-4569465)
chr3 (1-113)||(49200105-49200218)
chr3 (8-113)||(21711678-21711783)
chr3 (11-88)||(46173161-46173238)
chr3 (3-75)||(6096256-6096328)
chr3 (1-113)||(5236893-5237005)
chr3 (8-113)||(35925967-35926072)
chr3 (8-113)||(36029570-36029674)
chr3 (8-113)||(40735048-40735152)
chr3 (1-86)||(55302619-55302703)
chr3 (3-70)||(44331885-44331952)
chr3 (8-86)||(27027183-27027261)
chr3 (8-113)||(27038518-27038623)
chr3 (8-113)||(30709301-30709405)
chr3 (3-64)||(34490683-34490744)
chr3 (8-73)||(40734156-40734221)
chr3 (8-71)||(8370036-8370099)
chr3 (8-70)||(16264825-16264887)
chr3 (8-86)||(54593133-54593211)
chr3 (1-70)||(44331232-44331301)
chr3 (8-75)||(47923445-47923512)
chr3 (2-56)||(7764128-7764182)
chr3 (8-113)||(39032060-39032165)
chr3 (8-88)||(1735835-1735914)
chr3 (1-46)||(43404387-43404432)
chr3 (9-68)||(23410774-23410833)
chr3 (8-46)||(40592354-40592392)
chr3 (1-46)||(3393293-3393338)
chr3 (1-46)||(5258581-5258626)
chr3 (1-46)||(43402444-43402489)
chr3 (8-87)||(8127106-8127186)
chr3 (8-60)||(37726151-37726203)
chr3 (2-34)||(40912818-40912850)
chr3 (1-56)||(7761941-7761995)
chr3 (10-60)||(2671160-2671210)
chr3 (2-56)||(45094840-45094894)
chr3 (11-60)||(1306459-1306508)
chr3 (1-46)||(16498753-16498798)
chr3 (30-70)||(24694735-24694775)
chr3 (8-60)||(33386233-33386285)
chr3 (8-60)||(37408132-37408183)
[»] chr8 (27 HSPs)
chr8 (16-138)||(33351765-33351888)
chr8 (1-88)||(15212430-15212518)
chr8 (1-86)||(22975963-22976048)
chr8 (1-70)||(30143005-30143074)
chr8 (1-113)||(42435645-42435758)
chr8 (2-70)||(43036086-43036154)
chr8 (1-81)||(11383440-11383520)
chr8 (1-153)||(4743630-4743783)
chr8 (3-63)||(4733495-4733555)
chr8 (1-61)||(27810970-27811030)
chr8 (1-63)||(4731328-4731390)
chr8 (8-113)||(5701994-5702100)
chr8 (2-70)||(40221210-40221277)
chr8 (1-52)||(12703075-12703126)
chr8 (1-56)||(1746655-1746710)
chr8 (1-56)||(34256941-34256996)
chr8 (9-70)||(10014822-10014883)
chr8 (8-88)||(19175273-19175353)
chr8 (8-60)||(1261510-1261562)
chr8 (8-60)||(7412804-7412856)
chr8 (9-56)||(34254773-34254820)
chr8 (10-60)||(2627414-2627464)
chr8 (8-113)||(4456485-4456590)
chr8 (2-56)||(19945777-19945831)
chr8 (2-56)||(31217933-31217987)
chr8 (62-115)||(3051631-3051684)
chr8 (10-46)||(4759643-4759679)
[»] chr6 (22 HSPs)
chr6 (1-116)||(21593065-21593180)
chr6 (8-113)||(31085988-31086092)
chr6 (8-113)||(5017011-5017115)
chr6 (1-63)||(22964167-22964229)
chr6 (1-63)||(23824164-23824226)
chr6 (9-55)||(9183454-9183500)
chr6 (1-46)||(603673-603718)
chr6 (2-55)||(3809361-3809414)
chr6 (8-88)||(31979993-31980073)
chr6 (8-60)||(5757047-5757099)
chr6 (9-60)||(23896810-23896861)
chr6 (8-60)||(22709497-22709549)
chr6 (11-46)||(30125127-30125162)
chr6 (8-46)||(5571847-5571885)
chr6 (9-63)||(10076757-10076811)
chr6 (1-43)||(17759427-17759469)
chr6 (9-63)||(21272555-21272609)
chr6 (8-46)||(24435555-24435593)
chr6 (11-60)||(2171959-2172008)
chr6 (11-47)||(6438939-6438975)
chr6 (10-46)||(11857422-11857458)
chr6 (12-60)||(28155166-28155214)
[»] chr2 (28 HSPs)
chr2 (9-156)||(17863770-17863916)
chr2 (1-113)||(39284516-39284629)
chr2 (9-116)||(45726423-45726530)
chr2 (1-68)||(36318445-36318513)
chr2 (8-75)||(33528177-33528244)
chr2 (8-62)||(2837287-2837341)
chr2 (8-113)||(23077987-23078092)
chr2 (1-56)||(29867556-29867611)
chr2 (8-56)||(34389327-34389375)
chr2 (6-94)||(35447542-35447630)
chr2 (1-56)||(6595431-6595486)
chr2 (1-56)||(36988512-36988567)
chr2 (8-113)||(8389666-8389768)
chr2 (8-113)||(10706768-10706873)
chr2 (8-82)||(14698556-14698630)
chr2 (8-80)||(13569807-13569879)
chr2 (8-60)||(28258746-28258798)
chr2 (8-113)||(17865654-17865759)
chr2 (8-113)||(21630421-21630526)
chr2 (8-46)||(39483353-39483391)
chr2 (8-80)||(20522698-20522771)
chr2 (8-60)||(25410118-25410170)
chr2 (8-60)||(30833017-30833069)
chr2 (10-60)||(6266370-6266420)
chr2 (1-55)||(45099432-45099486)
chr2 (11-60)||(3492232-3492281)
chr2 (11-60)||(9295957-9296006)
chr2 (10-46)||(11098496-11098532)
[»] scaffold0066 (1 HSPs)
scaffold0066 (2-112)||(20852-20963)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-113)||(10959-11072)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-114)||(80937-81050)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-68)||(17700-17767)
[»] scaffold0466 (1 HSPs)
scaffold0466 (30-114)||(6749-6833)
[»] scaffold0087 (1 HSPs)
scaffold0087 (8-60)||(36401-36453)
[»] scaffold0036 (1 HSPs)
scaffold0036 (9-113)||(86066-86168)
[»] scaffold0098 (1 HSPs)
scaffold0098 (8-60)||(45675-45727)
[»] scaffold0510 (1 HSPs)
scaffold0510 (9-60)||(1179-1230)
[»] scaffold0006 (3 HSPs)
scaffold0006 (8-113)||(6162-6267)
scaffold0006 (8-46)||(2970-3008)
scaffold0006 (1-46)||(149497-149542)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-46)||(434218-434255)
[»] scaffold0188 (1 HSPs)
scaffold0188 (8-60)||(17527-17579)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 285
Target Start/End: Original strand, 30476892 - 30477145
Alignment:
Q  30 aaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtcacgattcttatcattctcaact 129  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30476892 aaaatcgtgtcacgattagacaccctgcaaaacatgcccactgcctagaaaatcgtgacacgcttactaaatcgtgtcacgattcttatcattctcaact 30476991  T
Q  130 tcacaaatttgaagacatacacaacaagtcctataaacattgctcggttatgatttcattaaaataaaagaagcttaattacaataacttcagagataat 229  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30476992 tcacaattttgaagacatacacaacaagttctataaacattgctcggttatgatttcattaaaataaaagaagcttaattacaataacttcagagataat 30477091  T
Q  230 ttnnnnnnnnnnnnngaagtgaattaaaaaacaaatttatcaggcctttgctactc 285  Q
    ||             || ||||||||||||||||||||||||||||||| ||||||    
T  30477092 tt--acaaagaaaaagacgtgaattaaaaaacaaatttatcaggccttttctactc 30477145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 28220665 - 28220776
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca-tgctcactgcctagaaaatcgtgacgcgcttactaaat 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||||||||| |||||||| |||| || || | || |    
T  28220665 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgggcaccctgcaaaacagtgctcactgccaagaaaatcatgacacgtttgccaatt 28220764  T
Q  102 cgtgtcacgatt 113  Q
    ||||||||||||    
T  28220765 cgtgtcacgatt 28220776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 28223860 - 28223971
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca-tgctcactgcctagaaaatcgtgacgcgcttactaaat 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||| | ||||||||| |||||||| |||| || || | || |    
T  28223860 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgggcaccctgcaaaacagttctcactgccaagaaaatcatgacacgtttgccaatt 28223959  T
Q  102 cgtgtcacgatt 113  Q
    ||||||||||||    
T  28223960 cgtgtcacgatt 28223971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 11348232 - 11348171
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  11348232 caagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacgattagacaccctgcaaaaca 11348171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 37033723 - 37033836
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    ||||| |||||||||||||| |||| || ||||||||| ||||||| |||||||||||||||||||||||  | | | ||||||||||| ||| ||  ||    
T  37033723 gcaaggcgaaaatcgtgtcatgtttcccgaaaatcgtgtcacgattggacaccctgcaaaacatgctcacgacattgcaaaatcgtgacacgcctatgaa 37033822  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  37033823 atcgtgtcacgatt 37033836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 44454891 - 44454779
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| | | ||||||||||| | || |||  |||||||||| ||||||  ||    
T  44454891 gcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattggacactcag-aaaacatgctctcggcatagccaaatcgtgacacgcttatgaa 44454793  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  44454792 atcgtgtcacgatt 44454779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 4553085 - 4553239
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaaa 100  Q
    |||| |||||||| | |||||||||| |||||||||| ||||||| || ||||||||||||||| |||| || | |  |||||||||| |||||   |||    
T  4553085 caagtcgaaaatcatatcacgttttctcaaaatcgtgtcacgattggataccctgcaaaacatgttcacggcattgcgaaatcgtgacacgcttcacaaa 4553184  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    ||||||||||||||  |   ||| ||| ||||||| ||||||| |||||||||||    
T  4553185 tcgtgtcacgattccaagttttcccaaattcacaattttgaaggcatacacaaca 4553239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 193126 - 193010
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcc-tagaaaatcgtgacgcgcttactaa 99  Q
    ||||||||||||| || ||||||||| ||||||| ||| || |||| ||||||||||||| ||||||||||||| |  ||||||||||| || || | ||    
T  193126 gcaagccgaaaatggtatcacgtttttccaaaattgtgtcatgattggacaccctgcaaaccatgctcactgccttcaaaaatcgtgacacgattgccaa 193027  T
Q  100 atcgtgtcacgattctt 116  Q
    ||| ||||||| |||||    
T  193026 atcatgtcacgtttctt 193010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26644521 - 26644469
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  26644521 gaaaatcgtgtcacgttttcacaaaatcgtgccacgatttgacaccgtgcaaa 26644469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 31658962 - 31658816
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||| |||||||||||||||||||||||| ||||||| | |||||||||||||| |||| |  | | | ||||||||||| ||| ||  ||||||||||    
T  31658962 aaaattgtgtcacgttttcccaaaatcgtgtcacgattgggcaccctgcaaaaca-gctctcgacattgcaaaatcgtgacacgcctatgaaatcgtgtc 31658864  T
Q  108 acgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    ||||||  | |  ||  ||||||||||| |||||||  ||||||||||    
T  31658863 acgatttctctgttttccaacttcacaattttgaaggaatacacaaca 31658816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 37070244 - 37070349
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||||||||||||||| |||||||   |||| ||  ||| ||||||| |||||| |||||||||||| || | |  |||||||||    
T  37070244 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccttgagaaaccatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 37070342  T
Q  107 cacgatt 113  Q
    |||||||    
T  37070343 cacgatt 37070349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 10924954 - 10924893
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||| |  |||||||||||||    
T  10924954 caagccgaaaatcgtgtcacatttttccaaaatcgtgtcacgattgggtaccctgcaaaaca 10924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3189082 - 3189027
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| ||| |||||    
T  3189082 gcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacgccctg 3189027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3197899 - 3197844
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| ||| |||||    
T  3197899 gcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacgccctg 3197844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3206717 - 3206662
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| ||| |||||    
T  3206717 gcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacgccctg 3206662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 13598877 - 13598982
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    |||||||||||||| ||||||||||||| || |||||||  | ||| || |||| ||||||| |||||||| |||||||||| || | |  |||||||||    
T  13598877 gaaaatcgtgtcacattttcccaaaatcatgacacgattgaataccttgaaaaaccatgctcgctgcctag-aaatcgtgacacgttgatgaaatcgtgt 13598975  T
Q  107 cacgatt 113  Q
    |||||||    
T  13598976 cacgatt 13598982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 20762402 - 20762348
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||| |||||||||||||| ||||||||||||||| ||||||| ||| |||||    
T  20762402 caagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg 20762348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 29652307 - 29652396
Alignment:
Q  23 ttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtcacgatt 113  Q
    |||| ||||||||||| |||||||   ||||||||||| |||||||||||||| |||||||||||| || | |  ||||||| ||||||||    
T  29652307 tttttccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgcct-gaaaatcgtgacacgttgatgaaatcgtatcacgatt 29652396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 49918073 - 49918019
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||||||||||||| | ||||||||| ||||||| | ||||||||||||||    
T  49918073 aaaatcgtgtcacgtttttcgaaaatcgtgtcacgattgggcaccctgcaaaaca 49918019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 3156591 - 3156539
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa 61  Q
    |||||||||| | ||||||||||||||||| ||||||| | ||||||||||||    
T  3156591 aaaatcgtgttatgttttcccaaaatcgtgtcacgatttggcaccctgcaaaa 3156539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 19361060 - 19361008
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  19361060 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 19361008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 19365916 - 19365864
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  19365916 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 19365864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 37879547 - 37879607
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||| |||||||||||||| |||| ||||||||||| |||||||   ||||||||||||||    
T  37879547 aagctgaaaatcgtgtcacatttttccaaaatcgtgtcacgattgagcaccctgcaaaaca 37879607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1833253 - 1833191
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||| |||||||||| | ||||||||||||||||| ||| ||| ||||  ||||||||||    
T  1833253 gcaagccaaaaatcgtgttatgttttcccaaaatcgtgtcaccattggacaatctgcaaaaca 1833191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 3282183 - 3282221
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  3282183 gaaaatcgtgtcacgttttctcaaaatcgtgacacgatt 3282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13659736 - 13659781
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||| ||| |||||||||||||||  |||||||    
T  13659736 gcaagccgaaaatcgtgacacattttcccaaaatcgtatcacgatt 13659781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 9986931 - 9986895
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  9986931 aaatcgtgtcacgatttcccaaaatcgtgtcacgatt 9986895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 12745853 - 12746007
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||| |||||    
T  12745853 gcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacaccctgccaaaca-gctcactgcctagaaaatcgtgtcacgcttgctaaa 12745951  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12745952 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 12746007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 9927897 - 9928052
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||| |||||||||||||||||||||  |||||  ||||    
T  9927897 gcaagccgaaaatcgtgtcacattttcccaaaatcgtgtcacgattgaacaccctgcaaaacatgttcactgcctagaaaatcgtgatacgcttgttaaa 9927996  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9927997 ttgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 9928052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 12739975 - 12740128
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || || |||||||||||||||| ||||| |||||||||||||||||| || || |||||    
T  12739975 gcaagccaaaaattgtgttacgttttcccaaaatcgtgtcgcggttggacaccctgcaaaaca-gctcagtgcctagaaaatcgtgacacgtttgctaaa 12740073  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12740074 tcgtgtcacgattcttatcattctcaacttcacaaatttgaaggcatacacaaca 12740128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 12748181 - 12748334
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || || |||||||||||||||| ||||| |||||||||||||||||| || || |||||    
T  12748181 gcaagccaaaaattgtgttacgttttcccaaaatcgtgtcgcggttggacaccctgcaaaaca-gctcagtgcctagaaaatcgtgacacgtttgctaaa 12748279  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12748280 tcgtgtcacgattcttatcattctcaacttcacaaatttgaaggcatacacaaca 12748334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 3754736 - 3754590
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtca 108  Q
    ||||||||||||| ||||   |||||||||  || |||  ||||||||||||||| ||||| || ||| |||||||||||  ||||  ||||||||||||    
T  3754736 aaaatcgtgtcacatttttttaaaatcgtgttacaattgtacaccctgcaaaaca-gctcattgtctaaaaaatcgtgacatgcttgttaaatcgtgtca 3754638  T
Q  109 cgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3754637 cgattcttgtcattctcaacttcacaaatttgaagacatacacaacaa 3754590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26363779 - 26363664
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||  ||| |||||||||| |||||||||||  | || | |||    
T  26363779 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctaaaaacaatgttcactgcctaaaaaatcgtgacatggttgccaaa 26363680  T
Q  101 tcgtgtcacgattctt 116  Q
    ||||||||||||||||    
T  26363679 tcgtgtcacgattctt 26363664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 54882553 - 54882438
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcc-tagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |  |||||||||||  | || | |||    
T  54882553 caagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaccatgctcactgccttcaaaaatcgtgacatgattgccaaa 54882454  T
Q  101 tcgtgtcacgattctt 116  Q
    |||||||||| |||||    
T  54882453 tcgtgtcacgtttctt 54882438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 5429411 - 5429298
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaaa 100  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |  | | | ||||||||||| ||||||| |||    
T  5429411 caagctgaaaatcgtatcacgttttcccaaaatcgtgtcacgattagacaccctgcaaaacatgctctcaacattgcaaaatcgtgacacgcttaccaaa 5429312  T
Q  101 tcgtgtcacgattc 114  Q
    |||||||| |||||    
T  5429311 tcgtgtcatgattc 5429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 6655470 - 6655357
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||| || | | ||||||||||| ||| ||  ||    
T  6655470 gcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctatgaa 6655371  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  6655370 atcgtgtcacgatt 6655357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 16628492 - 16628388
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| |||||||||||||| |||||||||||| |  | |  ||||||||||    
T  16628492 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaagcatgctcactgcct-gaaaatcgtgacacattgatgaaatcgtgtc 16628394  T
Q  108 acgatt 113  Q
    ||||||    
T  16628393 acgatt 16628388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 34570850 - 34570983
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||          ||||||||||||  | || | | ||||||||||| ||||| ||||    
T  34570850 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgat----------gcaaaacatgctttcggcgttggaaaatcgtgacacgcttgctaa 34570939  T
Q  100 atcgtgtcacgattcttatcattctcaacttcacaaatttgaag 143  Q
    ||||||||||||||||  |||| | |||||||||||||||||||    
T  34570940 atcgtgtcacgattctgttcatccccaacttcacaaatttgaag 34570983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 3778025 - 3778130
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||| |||| | |||||||||||| || | |   |||||||||    
T  3778025 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcgctgcttggaaaatcgtgacacgttgatgtaatcgtgtc 3778124  T
Q  108 acgatt 113  Q
    ||||||    
T  3778125 acgatt 3778130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52095797 - 52095852
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  52095797 gcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg 52095852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 6743035 - 6742981
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||    
T  6743035 aaaatcgtgtcacgttttcccaaaaacgtgccacgattaggcaccctgaaaaaca 6742981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 26176061 - 26176122
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||||||||||||||||||||||||||| ||| |||| || | ||||||||||||||    
T  26176061 caagccgaaaatcgtgtcacgttttcccaaaattgtgtcacggttgggcaccctgcaaaaca 26176122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40630498 - 40630430
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |  ||||||||||||||    
T  40630498 gcaagctgaaaatcgtgtcacgttttcccaaaatcgtgacacgattggacactc-acaaaacatgctcac 40630430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5370512 - 5370575
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacat 64  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||| ||| ||||| |||||||    
T  5370512 gcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctgaaaaacat 5370575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2209234 - 2209172
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||| | ||| ||||||||||    
T  2209234 gcaaaccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattgggcactctgcaaaaca 2209172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 36314851 - 36314746
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac-atgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||||||||||||||| |||||||   || ||||  |||| |||||| |||||| |||||||||||| || | |  |||||||||    
T  36314851 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcatcctgagaaactatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 36314753  T
Q  107 cacgatt 113  Q
    |||||||    
T  36314752 cacgatt 36314746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 36329060 - 36328955
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac-atgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||||||||||||||| |||||||   || ||||  |||| |||||| |||||| |||||||||||| || | |  |||||||||    
T  36329060 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcatcctgagaaactatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 36328962  T
Q  107 cacgatt 113  Q
    |||||||    
T  36328961 cacgatt 36328955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37740358 - 37740296
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||||||||| |||||||||||||||||||||||  |||||| | |||||| |||||||    
T  37740358 gcaagccgaaaatcatgtcacgttttcccaaaatcgtgttacgattgggcaccctacaaaaca 37740296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46570180 - 46570242
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||| | ||||||||| ||||    
T  46570180 gcaagccgaaaattgtgtcacgttttcccaaaatcttgtcacgattgggcaccctgcagaaca 46570242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 3909821 - 3909760
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||| |||||| ||||||| ||||||||| ||||||| |||||| ||||||||||||||||    
T  3909821 aaaatagtgtcatgttttccaaaaatcgtgtcacgatttgacaccgtgcaaaacatgctcac 3909760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 16622913 - 16622809
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||| ||| ||| |||   |||  |||||| |||||||||| ||| |||||||||||| || | |  ||||||||||    
T  16622913 gaaaatcgtgtcacgttttcccaaaattgtgacacaattgagcacaatgcaaaccatgctcactacct-gaaaatcgtgacacgttgatgaaatcgtgtc 16622815  T
Q  108 acgatt 113  Q
    ||||||    
T  16622814 acgatt 16622809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 29254182 - 29254141
Alignment:
Q  115 ttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  29254182 ttatcattctcaacttcacaagtttgaagacatacacaacaa 29254141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 5148154 - 5148206
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| |||||| |||||||||||||||||| | |||||||||||    
T  5148154 gaaaatcgtgtcaagttttcacaaaatcgtgccacgattggtcaccctgcaaa 5148206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 5268820 - 5268752
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcct 75  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||| |||| ||||||| ||||||    
T  5268820 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgaaaaaccatgctcgctgcct 5268752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 13992731 - 13992783
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| ||||||||||||||| ||||||| | |||||||||||    
T  13992731 gaaaatcgtgtcacgatttcccaaaatcgtgtcacgatttggcaccctgcaaa 13992783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 25861654 - 25861548
Alignment:
Q  8 gaaaatcgtgtcacgtttt-cccaaaatcgtgccacgattagacaccctgcaaa-acatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtg 105  Q
    ||||||||||||||||||| |||||||||||| |||||||   ||||||| |||  |||||||||||||| | |||||||||| || | |  ||||||||    
T  25861654 gaaaatcgtgtcacgtttttcccaaaatcgtgacacgattgagcaccctgaaaagccatgctcactgcct-ggaaatcgtgacacgttgatgaaatcgtg 25861556  T
Q  106 tcacgatt 113  Q
    ||||||||    
T  25861555 tcacgatt 25861548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 56179061 - 56179116
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||| ||| |||||    
T  56179061 gcaagccaaaaatcatgtcacgttttcccaaaatcgtgtcacgattggacgccctg 56179116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 8689117 - 8689079
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  8689117 gaaaatcgtgtcacgttttcccaaaatcgtgtcacgatt 8689079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 27417612 - 27417650
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  27417612 gaaaatcgtgtcacgttttcccaaaatcgtgtcacgatt 27417650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 35661952 - 35661902
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacac 52  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||| |||||    
T  35661952 caagccgaaaatcgtgacacattttcccaaaatcgtgtcacgattggacac 35661902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50674500 - 50674568
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    |||||| ||||||| ||||||||||||||||||||||  ||||||| ||||| |  ||||||||||||||    
T  50674500 gcaagctgaaaatcatgtcacgttttcccaaaatcgtaacacgattggacactc-acaaaacatgctcac 50674568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 54867655 - 54867758
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||||||||||| ||| |||||||   || |||| |||| ||||||| |||||  |||||||||||| || | |  |||||||||    
T  54867655 gaaaatcgtgtcacgttttcccaaaattgtgacacgattgagcatcctgaaaaaccatgctcgctgcc-cgaaaatcgtgacacgttgatgaaatcgtgt 54867753  T
Q  107 cacga 111  Q
    |||||    
T  54867754 cacga 54867758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 5143737 - 5143775
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  5143737 gaaaatcgtgtcacattttcacaaaatcgtgccacgatt 5143775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 5396311 - 5396273
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  5396311 gaaaatcgtgtcacgtttttccaaaatcgtgacacgatt 5396273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 10047843 - 10047947
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa--catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||| |||| ||   ||||||| ||||  ||||||| |||||| | |||||| ||| || | |  ||||||||||    
T  10047843 aaatcgtgtcacgttttcccaaaatcgtgacacggttgagcaccctgaaaaaaccatgctcgctgcct-ggaaatcgcgacacgttgatgaaatcgtgtc 10047941  T
Q  108 acgatt 113  Q
    ||||||    
T  10047942 acgatt 10047947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 31495756 - 31495806
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| ||||||| ||||||| ||||||| | |||||||||||    
T  31495756 aaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcaaa 31495806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 41639072 - 41639034
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  41639072 gaaaatcgtgtcacgtttttccaaaatcgtgtcacgatt 41639034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36994292 - 36994224
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||||||||||| ||| |||||||||| ||||| ||| ||||||| ||||| | | |||||||||||||    
T  36994292 gcaagccgaaaattgtgacacgttttccaaaaattgtgtcacgattggacactcag-aaaacatgctcac 36994224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 38152057 - 38151953
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||| |||||||||||||||||| | ||| |||||||   ||||||||||| | | |||||||||| | |||| ||||| || | |  ||||||||||    
T  38152057 gaaaattgtgtcacgttttcccaaatttgtgacacgattgagcaccctgcaaaccgtactcactgcct-ggaaattgtgacacgttgatgaaatcgtgtc 38151959  T
Q  108 acgatt 113  Q
    ||||||    
T  38151958 acgatt 38151953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 18377816 - 18377920
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtca 108  Q
    |||||||||||| | || | | |||||||| ||| |||  |||||| | ||||||||||  ||||| ||||||| ||||| ||||| |  ||||||||||    
T  18377816 aaaatcgtgtcatgattgctcgaaatcgtgtcacaattgaacacccagaaaaacatgcttcctgccgagaaaattgtgacacgcttgcataatcgtgtca 18377915  T
Q  109 cgatt 113  Q
    |||||    
T  18377916 cgatt 18377920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 28468125 - 28468073
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| ||| |||| |||||| ||||||| | |||||||||||    
T  28468125 gaaaatcgtgtcacgattttccaagatcgtgtcacgatttggcaccctgcaaa 28468073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 4585892 - 4585738
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaat 101  Q
    |||||| |||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||    
T  4585892 caagccaaaaatcttgtcacgttttcccaaaatagtgtcacgattggacaccctgcaaaacatgctcactgcctagaaaatcgtgacacacttgctaaat 4585793  T
Q  102 cgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4585792 agtgtcacaattcttatcattctcaacttcacaaatttgaagacatacacaacaa 4585738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 47674379 - 47674517
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac-atgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||  |||| ||||    
T  47674379 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcctggaaaatcgtgacatgcttgctaa 47674478  T
Q  100 atcgtgtcacgattcttatcattctcaacttcacaaatt 138  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  47674479 atcgtgtcacgattctcatcattctcaacttcacaaatt 47674517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 47676572 - 47676710
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  47676572 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcctagaaaatcgtgacacgcttgctaa 47676671  T
Q  100 atcgtgtcacgattcttatcattctcaacttcacaaatt 138  Q
    ||| ||||| |||||| |||||||||||||||| |||||    
T  47676672 atcatgtcatgattctcatcattctcaacttcataaatt 47676710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 14070270 - 14070424
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||  |||||||| ||| |||||||||||||| |||||||||| | || |  | |||    
T  14070270 gcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctgaaaaccatgctcactgccttgaaaatcgtgccacgatgccaaaa 14070369  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  14070370 tcgtgtcacgattc-aaccattctcaacttcacaaatttgaagacatacacaacaa 14070424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 14380298 - 14380452
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||  |||||||| ||| |||||||||||||| |||||||||| | || |  | |||    
T  14380298 gcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctgaaaaccatgctcactgccttgaaaatcgtgccacgatgccaaaa 14380397  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  14380398 tcgtgtcacgattc-aaccattctcaacttcacaaatttgaagacatacacaacaa 14380452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27347655 - 27347543
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca-tgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||||  ||    
T  27347655 gcaagccgaaaatcatgtca-gttttcccaaaatcgtgtcacgattgggcaccctgcaaaacagtgctcactgcctagaaaatcgtgacacgcttagcaa 27347557  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  27347556 atcgtgtcacgatt 27347543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 34311285 - 34311371
Alignment:
Q  30 aaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtcacgattctt 116  Q
    ||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||| || || | |||||||||||||||||||    
T  34311285 aaaatcgtgtcatgattggacaccctgcaaaccatgctcactgcctagaaaatcgtgacacgtttgccaaatcgtgtcacgattctt 34311371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32358490 - 32358575
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    |||||| |||||| |||||||||||||||||||||||  ||||||| || |||||| ||| |||||||||||||||||||||||||    
T  32358490 gcaagctgaaaattgtgtcacgttttcccaaaatcgtatcacgattggataccctgaaaaccatgctcactgcctagaaaatcgtg 32358575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2389806 - 2389694
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    |||||| |||||||||||||| ||||| |||||||||| ||||||| ||||||||  ||| ||||||||||| ||||||||||||| | || ||  ||||    
T  2389806 gcaagctgaaaatcgtgtcacattttctcaaaatcgtgtcacgattggacaccctaaaaaccatgctcactgtctagaaaatcgtgccacggttcataaa 2389707  T
Q  101 tcgtgtcacgatt 113  Q
    | |||||||||||    
T  2389706 ttgtgtcacgatt 2389694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 18126375 - 18126268
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||| ||| |||||| ||||||||||| |||| || || | ||     
T  18126375 caagccgaaaatcgtatcacgtttttccaaaatcgtg-cacgattggacaccctgcaaaaccatactcactacctagaaaatcatgacacgtttgccaat 18126277  T
Q  101 tcgtgtcac 109  Q
    |||||||||    
T  18126276 tcgtgtcac 18126268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4538987 - 4539049
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  4538987 gcaaaccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattaggcacccttcaaaaca 4539049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23554771 - 23554716
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  23554771 gcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg 23554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 49092167 - 49092245
Alignment:
Q  7 cgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    ||||||||||||||| |||||||||||||||| |||||||   ||||||||||| ||||||||||| || ||||||||||    
T  49092167 cgaaaatcgtgtcacattttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgtct-gaaaatcgtg 49092245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 6360567 - 6360628
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| | ||||||||||||||    
T  6360567 caagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacaattgggcaccctgcaaaaca 6360628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 43863988 - 43863878
Alignment:
Q  6 ccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgc-cta-gaaaatcgtgacgcgcttactaaatcg 103  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| | | |||||||||||   || |||  ||||| ||||| ||||| | ||||||    
T  43863988 ccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacactc-ggaaaacatgctctgggcactaccaaaatggtgacacgctttccaaatcg 43863890  T
Q  104 tgtcacgattct 115  Q
    ||||||||||||    
T  43863889 tgtcacgattct 43863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 33332071 - 33331965
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||| ||||||||||| ||| |||   ||||||  |||| ||||||||||||||| ||||||||||| || | |  ||||| |||    
T  33332071 gaaaatcgtgtcacgtttttccaaaatcgtgacacaattgagcaccctaaaaaaccatgctcactgcctaaaaaatcgtgacacgttgatgaaatcatgt 33331972  T
Q  107 cacgatt 113  Q
    |||||||    
T  33331971 cacgatt 33331965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48599932 - 48599994
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||||||||||||||||||| |||| ||||||| |||||||   ||||||||||||||    
T  48599932 gcaagccgaaaatcgtgtcacgtttccccataatcgtgtcacgattgtgcaccctgcaaaaca 48599994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25767398 - 25767450
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| ||||||||||||||| ||||||| | |||||||||||    
T  25767398 gaaaatcgtgtcacgatttcccaaaatcgtgtcacgatttggcaccctgcaaa 25767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 4796290 - 4796235
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||||||||||||| ||||||||||| |||||||   ||||||||||||||    
T  4796290 gaaaatcgtgtcacgtttttccaaaatcgtgtcacgattgagcaccctgcaaaaca 4796235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 2647318 - 2647213
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||| ||||||||||||||||||||||| ||||||||  ||||||  |||| ||||||| |||||| ||||||| |||| || | |  |||||||||    
T  2647318 gaaaatcatgtcacgttttcccaaaatcgtgacacgattaagcaccctcaaaaaccatgctcgctgcct-gaaaatcctgacacgttgatgaaatcgtgt 2647220  T
Q  107 cacgatt 113  Q
     ||||||    
T  2647219 tacgatt 2647213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 4178505 - 4178451
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||| |||||||||||||| ||||||||||||||| ||||||| ||| |||||    
T  4178505 caagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg 4178451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48489162 - 48489100
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||| |||| |||||||||||||||| |||||||| |||| ||  |||||||||||||||    
T  48489162 gcaagccaaaaaccgtgtcacgttttccctaaatcgtgtcacggttgaacaccctgcaaaaca 48489100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 79867 - 79970
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||| |||||| |||| ||||||||||| ||||||| ||   |||||||| |||||||||||||| | |||||||||| || | |  ||||||||||    
T  79867 gaaaatcttgtcacatttttccaaaatcgtgacacgatt-gagcacctgcaaaccatgctcactgcct-ggaaatcgtgacacgttaatgaaatcgtgtc 79964  T
Q  108 acgatt 113  Q
    ||||||    
T  79965 acgatt 79970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 24789571 - 24789522
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||| |||||||| |||||||||||||| | |||||||||||    
T  24789571 aatcgtgtcacgatttcccaagatcgtgccacgatttggcaccctgcaaa 24789522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 2479812 - 2479864
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||| ||| |||| |||||||||| ||||||| |||||||||||||    
T  2479812 gaaaatcgtgtaacgatttcacaaaatcgtgacacgatttgacaccctgcaaa 2479864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21983719 - 21983771
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||||||||||| ||||||| |||| ||||| | |||||||||||    
T  21983719 gaaaatcgtgtcacgttttcacaaaatcatgccgcgattggtcaccctgcaaa 21983771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 19495693 - 19495646
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||||| |||||||||||||||| ||| ||||||| |||||||||    
T  19495693 aaaatcgtggcacgttttcccaaaattgtgtcacgattggacaccctg 19495646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 1533048 - 1532999
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  1533048 aatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 1532999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30026435 - 30026480
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||| |||||||||||||||||| ||||||||| || |||||||    
T  30026435 gcaagctgaaaatcgtgtcacgtttccccaaaatcatgtcacgatt 30026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21646495 - 21646547
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| ||| |||| |||||| ||||||| | |||||||||||    
T  21646495 gaaaatcgtgtcacgattttccaagatcgtgtcacgatttggcaccctgcaaa 21646547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21811882 - 21811834
Alignment:
Q  12 atcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||| |||||||| ||||||||||||||   |||||||||||    
T  21811882 atcgtgtcacgatttcccaagatcgtgccacgattttgcaccctgcaaa 21811834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21989384 - 21989435
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||||||||| | |||||||||||||||||| | | |||||||||    
T  21989384 gaaaatcgtgtcacgttt-cacaaaatcgtgccacgattggtcgccctgcaaa 21989435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 47264119 - 47264171
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||| || ||| ||||||||||| |||||||| ||||    
T  47264119 gaaaatcgtgtcacgatttcacacaattgtgccacgatttgacaccctacaaa 47264171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 32636555 - 32636402
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| | ||||| ||||| | |||    
T  32636555 gcaagtcgaaaatcgtgccacgttttcccaaaatcgtgtcacgattggacaccttgcaaaacatgttcactgcctagaaa-tggtgacacgcttgccaaa 32636457  T
Q  101 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32636456 tcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 32636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42428854 - 42428971
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||||    
T  42428854 gcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcacttcctagaaaatcgtgacacgcttactaa 42428953  T
Q  100 atcgtgtcacgattctta 117  Q
    ||||||||||||| ||||    
T  42428954 atcgtgtcacgatcctta 42428971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 37438876 - 37438724
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaat 101  Q
    |||||| ||||||||||||||||||||||||||| || ||||||| ||||| ||| ||| |||||||||||||| |||||||||  | || |  | ||||    
T  37438876 caagccaaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacactctgaaaaccatgctcactgccttgaaaatcgtaccacgatgccaaaat 37438777  T
Q  102 cgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    | |||||||||||  | |||||||||||||||||||||||||||||| ||||||    
T  37438776 catgtcacgattc-caacattctcaacttcacaaatttgaagacatatacaaca 37438724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42426671 - 42426788
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||| ||||| ||||    
T  42426671 gcaaaccgaaaattgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcccagaaaatcatgacacgcttgctaa 42426770  T
Q  100 atcgtgtcacgattctta 117  Q
    ||||||| ||||| ||||    
T  42426771 atcgtgtgacgatcctta 42426788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 16651067 - 16651198
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacat-gctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtca 108  Q
    ||||||||||||||||||||||||||||| || ||||    |||||| ||||||| |||||||||||   |||||||| | || || |||||||||| ||    
T  16651067 aaatcgtgtcacgttttcccaaaatcgtgtcatgattgagtaccctgaaaaacattgctcactgcctcagaaatcgtgtcacgtttgctaaatcgtgaca 16651166  T
Q  109 cgattcttatcattctcaacttcacaaatttg 140  Q
    ||||||||||||||| ||||||||||||||||    
T  16651167 cgattcttatcattcccaacttcacaaatttg 16651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 213068 - 212991
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  213068 aaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacgccctgcaaaccatgctcactacctagaaaatcgtg 212991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 40146780 - 40146667
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaat 101  Q
    ||||| |||||||| ||||| |||||||||||||||| ||||||| ||||||||| ||| |||| |||||||||||||||||||| | || ||  || ||    
T  40146780 caagctgaaaatcgagtcacattttcccaaaatcgtgtcacgattggacaccctgaaaaccatgttcactgcctagaaaatcgtgccacggttcatagat 40146681  T
Q  102 cgtgtcacgattct 115  Q
    ||||||||||||||    
T  40146680 cgtgtcacgattct 40146667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 11916592 - 11916487
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||  |||||||||| |||||||||||| || | |  |||| |||||    
T  11916592 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccacactcactgcctggaaaatcgtgacacgttgatgaaattgtgtc 11916493  T
Q  108 acgatt 113  Q
    ||||||    
T  11916492 acgatt 11916487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 5057562 - 5057478
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    |||| ||||||| |||||||||||| ||||||||||| ||||||| ||||||||| |||  ||||||| ||||||||||||||||    
T  5057562 caagtcgaaaattgtgtcacgttttaccaaaatcgtgtcacgattggacaccctgaaaactatgctcattgcctagaaaatcgtg 5057478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 28751027 - 28751174
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcct-agaaaatcgtgacgcgcttactaaat--cgtgt 106  Q
    |||| |||||||||||||||||||||||| |||||||  |||||||||||||||  ||| |  | | |  |||||||||  || || | ||||  |||||    
T  28751027 aaattgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctgcaaaacaa-ctctcgacattacgaaatcgtgaaacgattgccaaatatcgtgt 28751125  T
Q  107 cacgattcttatcattctcaacttcacaaatttgaagacatacacaaca 155  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  28751126 cacgattctttacattctcaactttacaaatttgaagacatacacaaca 28751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 12083798 - 12083693
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||  ||| ||| |||   ||||||| ||| |||||||||||||| | |||||||||| || | |  ||||||||||    
T  12083798 gaaaatcgtgtcacgttttcccaaaactgtgacacaattgagcaccctgtaaaccatgctcactgcctgggaaatcgtgacacgttgatgaaatcgtgtc 12083699  T
Q  108 acgatt 113  Q
    ||||||    
T  12083698 acgatt 12083693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 14520706 - 14520811
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    |||||||||||||||||||||||||||| || |||||||   |||||||  ||| ||||||| |||||| |||||||||||| || | |  |||||||||    
T  14520706 gaaaatcgtgtcacgttttcccaaaatcatgacacgattgagcaccctgagaaaccatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 14520804  T
Q  107 cacgatt 113  Q
    |||||||    
T  14520805 cacgatt 14520811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 9352955 - 9352903
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||| || ||||||||||||||| |||||||||||||    
T  9352955 gaaaatcgtgtcacgatttcacagaatcgtgccacgatttgacaccctgcaaa 9352903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30683344 - 30683395
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacac 52  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  30683344 gcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacac 30683395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13487935 - 13487820
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgccta-gaaaatcgtgacgcgcttactaa 99  Q
    |||||||||||||||||    ||||||||||||||||| |||||||   ||||||| |||| ||||||| |||| | |||||||||||| || | |  ||    
T  13487935 gcaagccgaaaatcgtgct--gttttcccaaaatcgtgtcacgattgagcaccctgaaaaatatgctcattgccaaggaaaatcgtgacacgttgatgaa 13487838  T
Q  100 atcgtgtcacgattctta 117  Q
    ||||||||||||| ||||    
T  13487837 atcgtgtcacgatcctta 13487820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 24136336 - 24136388
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  24136336 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 24136388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 9789663 - 9789713
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| ||||||| ||||||| ||||||| | |||||||||||    
T  9789663 aaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcaaa 9789713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 11181450 - 11181412
Alignment:
Q  30 aaaatcgtgccacgattagacaccctgcaaaacatgctc 68  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  11181450 aaaatcgtgtcacgattggacaccctgcaaaacatgctc 11181412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 18442087 - 18442137
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| ||||||| ||||||| ||||||| | |||||||||||    
T  18442087 aaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcaaa 18442137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 30683269 - 30683306
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  30683269 aaaatcgtgtcacgttttcccaaaattgtgtcacgatt 30683306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38746502 - 38746457
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||||||||||||||| ||||||  ||| |||||||    
T  38746502 gcaagccgaaaatcgtgtcacgtttttccaaaaatgtgtcacgatt 38746457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 19634139 - 19634111
Alignment:
Q  128 cttcacaaatttgaagacatacacaacaa 156  Q
    |||||||||||||||||||||||||||||    
T  19634139 cttcacaaatttgaagacatacacaacaa 19634111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 28807219 - 28807171
Alignment:
Q  12 atcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||| |||||||| ||||||||||||||   |||||||||||    
T  28807219 atcgtgtcacgatttcccaagatcgtgccacgattttgcaccctgcaaa 28807171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 29812787 - 29812657
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac-atgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||    
T  29812787 aaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcctagaaaatcgtgacacacttgctaaatcgtgtc 29812688  T
Q  108 acgattcttatcattctcaacttcacaaatt 138  Q
    |||||||| |||||||| |||||||||||||    
T  29812687 acgattctcatcattcttaacttcacaaatt 29812657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 29810600 - 29810464
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac-atgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    ||||||| ||||| |||  ||||||| | ||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||| ||||| ||||| ||||    
T  29810600 gcaagccaaaaattgtgctacgtttttctaaaatcgtgtcacgattggacaccctgcaaaaccatgctcaatgcctagaaaattgtgacacgcttgctaa 29810501  T
Q  100 atcgtgtcacgattcttatcattctcaacttcacaaa 136  Q
    ||| |||||||||||| ||||||||||||||||||||    
T  29810500 atcatgtcacgattctcatcattctcaacttcacaaa 29810464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 31340697 - 31340812
Alignment:
Q  2 caagccgaaaatcgtgtcacgtttt-cccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||||| ||||| ||||||||| || ||||||| ||||||||| ||| ||||||||||||||||||||||||||| || || | |||    
T  31340697 caagccgaaaatcgtgtcatgtttttcccaaaatcatgtcacgattggacaccctgaaaaccatgctcactgcctagaaaatcgtgacacggttgccaaa 31340796  T
Q  101 tcgtgtcacgattctt 116  Q
    ||||||||||||||||    
T  31340797 tcgtgtcacgattctt 31340812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 51398553 - 51398445
Alignment:
Q  6 ccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgt 104  Q
    |||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||| |||||||||||||||| ||||||  |||||||    
T  51398553 ccgaaaattgtgtcacgttttcccaaaatcgtgtcacaattggacaccctgcaaaaccatgctcactacctagaaaatcgtgacacgcttagcaaatcgt 51398454  T
Q  105 gtcacgatt 113  Q
    || ||||||    
T  51398453 gttacgatt 51398445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36018376 - 36018262
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||   ||||| |  |||| |||||||||||||||||||||||||| ||||| |  |    
T  36018376 gcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacgattgagcacccagaaaaaatatgctcactgcctagaaaatcgtgacacgcttgcgta 36018277  T
Q  100 atcgtgtcacgattc 114  Q
    |||||||||||||||    
T  36018276 atcgtgtcacgattc 36018262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4569465 - 4569352
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||  ||| ||||| ||||||||||||||| ||| | || |  | |||    
T  4569465 gcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacaccctaaaaaccatgcgcactgcctagaaaattgtgccacgatgccaaaa 4569366  T
Q  101 tcgtgtcacgattc 114  Q
    ||||||||||||||    
T  4569365 tcgtgtcacgattc 4569352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 49200105 - 49200218
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| || | | ||||||||||| ||| |   ||    
T  49200105 gcaagccgaaaatcgtgtcacgtttccccaacatcgtgtcacgattggacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctgtaaa 49200204  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  49200205 atcgtgtcacgatt 49200218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 21711678 - 21711783
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||| |||||||||||||||||||||||| |||||||   ||||||| ||| |||||||||||||| |||||||||||| || | |  ||||||||||    
T  21711678 gaaaattgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgaaaaccatgctcactgcctggaaaatcgtgacacgttgaagaaatcgtgtc 21711777  T
Q  108 acgatt 113  Q
    ||||||    
T  21711778 acgatt 21711783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 46173238 - 46173161
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgac 88  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| | ||||||||||    
T  46173238 aatcgtgtcatgttttcccaaaatcgtgtcacgattggacaccctgcaaaccatgctcactgccttggaaatcgtgac 46173161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 6096256 - 6096328
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcct 75  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||    
T  6096256 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacaattggacaccctgcaaaccatgctcagtgcct 6096328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 5236893 - 5237005
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| | | ||||||||||| | || |||  |||||||||| ||||||  ||    
T  5236893 gcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacactcag-aaaacatgctctcggcatagccaaatcgtgacacgcttatgaa 5236991  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  5236992 atcgtgtcacgatt 5237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 35925967 - 35926072
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||||||||||||||||| |||| ||||| |||||||   ||||||||||| |||||||||||||| | |||||||||| || | |  ||||||||||    
T  35925967 gaaaatcgtgtcacgttttctcaaactcgtgacacgattgagcaccctgcaaaccatgctcactgcctgggaaatcgtgacacgttgatgaaatcgtgtc 35926066  T
Q  108 acgatt 113  Q
    ||||||    
T  35926067 acgatt 35926072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 36029570 - 36029674
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||| ||||||||||| ||||||||  ||||||||||| |||| || |||||| |||||||||||| || | |  ||||||||||    
T  36029570 gaaaatcgtgtcacgtttttccaaaatcgtgacacgattaagcaccctgcaaaccatgttcgctgcct-gaaaatcgtgacacgttgataaaatcgtgtc 36029668  T
Q  108 acgatt 113  Q
    ||||||    
T  36029669 acgatt 36029674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 40735152 - 40735048
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||||| || | |||||||||| || | |  ||||||||||    
T  40735152 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactg-cttggaaatcgtgacacgttgatgaaatcgtgtc 40735054  T
Q  108 acgatt 113  Q
    ||||||    
T  40735053 acgatt 40735048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 55302619 - 55302703
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||  |||||||| |||  ||||||||||||||||||||||||    
T  55302619 gcaagccgaaaatcgtatcacgttttcccaaa-tcgtgtcacgattgaacaccctgaaaacaatgctcactgcctagaaaatcgtg 55302703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 44331885 - 44331952
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||    
T  44331885 aagccaaaaatcgtgtcacgtttttccaaaatcgtgtcacgattggacaccctgcaaaacatactcac 44331952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 27027183 - 27027261
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    ||||||||||||||||||||||||||||||| |||||||   ||| ||||||| |||||||||||||| | ||||||||    
T  27027183 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcactctgcaaaccatgctcactgcctgggaaatcgtg 27027261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 27038518 - 27038623
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||||||||||| |||||||||||||||| || ||||   ||||||||||| |||||||||||||| | |||||||| | || | |  ||||||||||    
T  27038518 gaaaatcgtgtcacattttcccaaaatcgtgacatgattgagcaccctgcaaaccatgctcactgcctgggaaatcgtgtcacgttgatgaaatcgtgtc 27038617  T
Q  108 acgatt 113  Q
    ||||||    
T  27038618 acgatt 27038623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 30709405 - 30709301
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||| ||||||||||||| |||||||||| |||||||  |||||||||||| |||||||||| ||| |||||| ||||| || | |  ||||||||||    
T  30709405 gaaaattgtgtcacgttttctcaaaatcgtgacacgattgaacaccctgcaaaccatgctcactacct-gaaaattgtgacacgttgatgaaatcgtgtc 30709307  T
Q  108 acgatt 113  Q
    ||||||    
T  30709306 acgatt 30709301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 34490744 - 34490683
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacat 64  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||    
T  34490744 aagccgaaaatcgtgtcacgtttttccaaaatcgtgtcacgattggataccctgcaaaacat 34490683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 40734221 - 40734156
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgc 73  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||||||    
T  40734221 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgc 40734156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 8370099 - 8370036
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcact 71  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||||    
T  8370099 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcact 8370036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 16264825 - 16264887
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| |||||||||    
T  16264825 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcac 16264887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 54593211 - 54593133
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    ||||||||||||||||||||||||||| | | |||||||  | ||| || ||| |||||||||||||||||||||||||    
T  54593211 gaaaatcgtgtcacgttttcccaaaattgagtcacgattgaataccatgaaaaccatgctcactgcctagaaaatcgtg 54593133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44331301 - 44331232
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||  |||||| ||||||||| |||||    
T  44331301 gcaagccaaaaatcgtgtcactttttcccaaaatcgtgtcacgattgaacacccagcaaaacatactcac 44331232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 47923512 - 47923445
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcct 75  Q
    ||||||||||||||||||||||||||  ||| |||||||   ||||||||||| ||||||||||||||    
T  47923512 gaaaatcgtgtcacgttttcccaaaaatgtgacacgattgagcaccctgcaaaccatgctcactgcct 47923445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 7764182 - 7764128
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  7764182 caagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacgccctg 7764128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 39032165 - 39032060
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    |||||||||||||| |||||||||||||||| |||||||   |||||||  ||| ||||||| |||||| |||||||||||| || | |  |||||||||    
T  39032165 gaaaatcgtgtcacattttcccaaaatcgtgacacgattgagcaccctgagaaaccatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 39032067  T
Q  107 cacgatt 113  Q
    |||||||    
T  39032066 cacgatt 39032060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1735914 - 1735835
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa-acatgctcactgcctagaaaatcgtgac 88  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||| |||  |||||||||||||| ||||||||||||    
T  1735914 gaaaatcgtgtcacgttttcccaaaatcgtg-cacgattgagcaccctgaaaagccatgctcactgcct-gaaaatcgtgac 1735835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43404387 - 43404432
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    
T  43404387 gcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgatt 43404432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23410774 - 23410833
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctc 68  Q
    ||||| ||| |||||||| ||||||| ||| ||||||| |||||||||||||||||||||    
T  23410774 aaaattgtgacacgtttttccaaaattgtgtcacgattggacaccctgcaaaacatgctc 23410833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 40592392 - 40592354
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  40592392 gaaaatcgtgtcacgttttcccaaaatcgtgacacgatt 40592354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3393338 - 3393293
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||    
T  3393338 gcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgatt 3393293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5258581 - 5258626
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||    
T  5258581 gcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgatt 5258626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43402444 - 43402489
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||    
T  43402444 gcaagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacgatt 43402489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 8127106 - 8127186
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaa-aacatgctcactgcctagaaaatcgtga 87  Q
    ||||||||||||||  ||||||||||||||| |||||||   ||||||| ||   ||||||||||||||| ||||||||||    
T  8127106 gaaaatcgtgtcacactttcccaaaatcgtgacacgattgagcaccctgaaagcccatgctcactgcctaaaaaatcgtga 8127186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 37726151 - 37726203
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| || | |||||||||| ||||||| |||||||||||||    
T  37726151 gaaaatcgtgtcacgattccacaaaatcgtgtcacgatttgacaccctgcaaa 37726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 40912850 - 40912818
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaat 34  Q
    |||||||||||||||||||||||||||||||||    
T  40912850 caagccgaaaatcgtgtcacgttttcccaaaat 40912818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7761995 - 7761941
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||| ||| |||||    
T  7761995 gcaagccaaaaatcgtgtcacgttt-cccaaaatcgtgtcacgattggacgccctg 7761941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 2671210 - 2671160
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| |||||||| |||||||||||||| | || ||||||||    
T  2671210 aaatcgtgtcacgatttcccaagatcgtgccacgatttggcatcctgcaaa 2671160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 45094894 - 45094840
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||| |||||||||||||| ||||||||||| ||| ||||||| ||| |||||    
T  45094894 caagccaaaaatcgtgtcacgatttcccaaaattgtgtcacgattggacgccctg 45094840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 1306459 - 1306508
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  1306459 aatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 1306508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16498798 - 16498753
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||| ||| |||||||||||||||  |||||||    
T  16498798 gcaagccgaaaatcgtgacacattttcccaaaatcgtatcacgatt 16498753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 24694775 - 24694735
Alignment:
Q  30 aaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    |||||||||  |||||| |||||||||||||||||||||||    
T  24694775 aaaatcgtgatacgattggacaccctgcaaaacatgctcac 24694735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 33386285 - 33386233
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| || | |||||||||| ||||||| | |||||||||||    
T  33386285 gaaaatcgtgtcacgattccacaaaatcgtgtcacgatttggcaccctgcaaa 33386233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 37408183 - 37408132
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| ||| | | ||||||||||||||| |||||||||||||    
T  37408183 gaaaatcgtgtcacgatttac-acaatcgtgccacgatttgacaccctgcaaa 37408132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 33351888 - 33351765
Alignment:
Q  16 tgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac-atgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtcacgattc 114  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  33351888 tgtcatgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgttcactgcctaaaaaatcgtgacacgcttgctaaatcgtgtcacgattc 33351789  T
Q  115 ttatcattctcaacttcacaaatt 138  Q
    | |||||||| |||||||||||||    
T  33351788 tcatcattcttaacttcacaaatt 33351765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15212518 - 15212430
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgac 88  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  15212518 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaaccatgctcactgcctagaaaatcgtgac 15212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22976048 - 22975963
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtg 86  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||| ||||||||| |||||||||    
T  22976048 gcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgaaaaccatgcccactgcctaaaaaatcgtg 22975963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30143074 - 30143005
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  30143074 gcaagccgaaaatcgtgtcacattttcccaaaatcgtgtcacgattggacaccctgcaaaacatgctcac 30143005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 42435645 - 42435758
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || | | ||||||||||| ||| ||  ||    
T  42435645 gcaagacgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctatgaa 42435744  T
Q  100 atcgtgtcacgatt 113  Q
    || |||||||||||    
T  42435745 attgtgtcacgatt 42435758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 43036154 - 43036086
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  43036154 caagtcgaaaatcgtgtcacgtttttccaaaatcgtgtcacgattggacaccctgcaaaacatgctcac 43036086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11383520 - 11383440
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaa 81  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||  ||| ||||||||||| ||||||||    
T  11383520 gcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacaattggacaccctaaaaaccatgctcactgtctagaaaa 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4743630 - 4743783
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgctt-acta 98  Q
    ||||| ||||||||||||||||||| | |||||||||| ||||||| |||||||| |||||||||||||| || | |  |||| |||||  |||| |||     
T  4743630 gcaagtcgaaaatcgtgtcacgtttcctcaaaatcgtgtcacgattggacacccttcaaaacatgctcacggcattgcgaaattgtgacatgcttcact- 4743728  T
Q  99 aatcgtgtcacgattcttatcattctcaacttcacaaatttgaagacatacacaa 153  Q
    ||||||||||||||||  |   ||| ||||||||||||||||||| |||| ||||    
T  4743729 aatcgtgtcacgattccaagttttcccaacttcacaaatttgaaggcataaacaa 4743783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 4733555 - 4733495
Alignment:
Q  3 aagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||||| ||||||    
T  4733555 aagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattgaacaccctggaaaaca 4733495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27811030 - 27810970
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa 61  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||    
T  27811030 gcaagccgaaaatcgtgtcacattttctcaaaatcgtgtcacgattggacaccctgcaaaa 27810970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4731390 - 4731328
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||| ||||||    
T  4731390 gcaagccgaaaatcatgtcatgttttcccaaaatcgtgtcacgattggacaccctgtaaaaca 4731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 5702100 - 5701994
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||| ||||||||||| |||||||   |||||||||||| ||||||||| | ||||||||||  ||| || | |  |||||||||    
T  5702100 gaaaatcgtgtcacgtttttccaaaatcgtgacacgattgagcaccctgcaaaaccatgctcaccgtctagaaaatcaagacacgttgatgaaatcgtgt 5702001  T
Q  107 cacgatt 113  Q
    |||||||    
T  5702000 cacgatt 5701994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 40221277 - 40221210
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |  ||||||||||||||    
T  40221277 caagctgaaaatcgtgtcacgttttcccaaaatcgtgacacgattggacactc-acaaaacatgctcac 40221210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12703075 - 12703126
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacac 52  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  12703075 gcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacac 12703126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1746655 - 1746710
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||| ||| |||||    
T  1746655 gcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg 1746710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34256941 - 34256996
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||| ||| |||||    
T  34256941 gcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacgattggacgccctg 34256996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 10014883 - 10014822
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcac 70  Q
    |||||||||||| | || |||||||||||| ||||||| || |||||| |||||||||||||    
T  10014883 aaaatcgtgtcatgattgcccaaaatcgtgtcacgattggaaaccctgaaaaacatgctcac 10014822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 19175353 - 19175273
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgac 88  Q
    ||||||| ||||||||||||||||||||||| |||||||   |||||||  ||| ||||||| |||||| ||||||||||||    
T  19175353 gaaaatcatgtcacgttttcccaaaatcgtgacacgattgagcaccctgagaaaccatgctccctgcct-gaaaatcgtgac 19175273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1261562 - 1261510
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  1261562 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 1261510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 7412804 - 7412856
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||| |||||| || |||||||| |||||||||||||    
T  7412804 gaaaatcgtgtcacgatttcacaaaattgtaccacgatttgacaccctgcaaa 7412856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 34254773 - 34254820
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||||||||||| ||||||||||||||| || |||||||| |||||    
T  34254773 aaaatcgtgtcacgatttcccaaaatcgtgtcatgattagacgccctg 34254820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 2627464 - 2627414
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| ||||||||||||||| ||||||| | |||| ||||||    
T  2627464 aaatcgtgtcacgatttcccaaaatcgtgtcacgatttggcaccatgcaaa 2627414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 4456485 - 4456590
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    |||||||  |||||||||||||||| ||||| |||||||   |||||||  ||| ||||||| |||||| |||||||||||| || | |  |||||||||    
T  4456485 gaaaatcacgtcacgttttcccaaattcgtgacacgattgagcaccctgagaaaccatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 4456583  T
Q  107 cacgatt 113  Q
    |||||||    
T  4456584 cacgatt 4456590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 19945777 - 19945831
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||| |||||||||||||| ||||| ||||||||| ||||||| ||| |||||    
T  19945777 caagccaaaaatcgtgtcacgatttcctaaaatcgtgtcacgattggacgccctg 19945831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 31217987 - 31217933
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    |||||| |||||||||||||| ||||||||||||||| ||| ||| ||| |||||    
T  31217987 caagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacaattggacgccctg 31217933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 3051631 - 3051684
Alignment:
Q  62 catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtcacgattct 115  Q
    ||||||||| | ||||||||||||||| ||| ||| ||||| ||||||||||||    
T  3051631 catgctcacggtctagaaaatcgtgacacgcctaccaaatcatgtcacgattct 3051684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 4759679 - 4759643
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  4759679 aaatcgtgtcacgatttcccaagatcgtgccacgatt 4759643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21593180 - 21593065
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||||| |||||||||||||||| || || | |||    
T  21593180 gcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacaccctgaaaaccatgctcactacctagaaaatcgtgacacggttgccaaa 21593081  T
Q  101 tcgtgtcacgattctt 116  Q
    || |||||||||||||    
T  21593080 tcatgtcacgattctt 21593065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 31086092 - 31085988
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||| ||||||||||| |||||||   ||||||||||| |||||||||||||| | ||||| |||| |||| |  ||||||||||    
T  31086092 gaaaatcgtgtcacgtttttccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgcct-ggaaatcatgacacgctgatgaaatcgtgtc 31085994  T
Q  108 acgatt 113  Q
    ||||||    
T  31085993 acgatt 31085988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 5017115 - 5017011
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    |||||||||||||||||||| |||||||||| |||||||   ||||||||||| ||||||||||| || | |||||||||| || | |  ||||||||||    
T  5017115 gaaaatcgtgtcacgttttctcaaaatcgtgacacgattgagcaccctgcaaaccatgctcactg-cttggaaatcgtgacacgttgatgaaatcgtgtc 5017017  T
Q  108 acgatt 113  Q
    ||||||    
T  5017016 acgatt 5017011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22964167 - 22964229
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||||||    
T  22964167 gcaagccaaaaatcgtgtcacgttttcccaaaatcgtatcacgattgaacaccctgcaaaaca 22964229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23824226 - 23824164
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||  |||||||||||||||    
T  23824226 gcaagccaaaaatcgtgtcacgttttcccaaaatcgtatcacgattgaacaccctgcaaaaca 23824164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 9183454 - 9183500
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccct 55  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  9183454 aaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccct 9183500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 603673 - 603718
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  603673 gcaagccgaaaatcatgtcacgttttcccaaaatcgtgtcacgatt 603718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 3809361 - 3809414
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccct 55  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| | ||||||    
T  3809361 caagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacgattgggcaccct 3809414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 31979993 - 31980073
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgac 88  Q
    |||||| |||||||||||| ||||||||||| |||||||   ||||||| |||| |||||||||||||| ||||||||||||    
T  31979993 gaaaattgtgtcacgtttttccaaaatcgtgacacgattgatcaccctgaaaaaccatgctcactgcct-gaaaatcgtgac 31980073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 5757099 - 5757047
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||| ||||||||| |||||||| |||||||||||||    
T  5757099 gaaaatcgtgtcacgatttcacaaaatcgtaccacgatttgacaccctgcaaa 5757047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 23896810 - 23896861
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||||    
T  23896810 aaaatcgtgtcacgatttcacaaaatcgtaccacgatttgacaccctgcaaa 23896861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22709497 - 22709549
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  22709497 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 22709549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 30125162 - 30125127
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||| |||||||||||||||||||||||    
T  30125162 aatcgtgtcacgatttcccaaaatcgtgccacgatt 30125127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 5571885 - 5571847
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  5571885 gaaaatcgtgtcacgttttctcaaaatcgtgacacgatt 5571847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 10076811 - 10076757
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    |||||||| ||||||||||||||||||||  || |||| | ||||||||||||||    
T  10076811 aaaatcgtatcacgttttcccaaaatcgtatcatgattgggcaccctgcaaaaca 10076757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17759469 - 17759427
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacg 43  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||    
T  17759469 gcaagccgaaaattgtgtcacgtttccccaaaatcgtgtcacg 17759427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 21272609 - 21272555
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaaca 63  Q
    ||||||||| |||| || |||||||||||| ||||||| |||||||| |||||||    
T  21272609 aaaatcgtgacacgattacccaaaatcgtgtcacgattggacacccttcaaaaca 21272555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 24435593 - 24435555
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||||||||||||||||| || |||||||    
T  24435593 gaaaatcgtgtcacgttttcccaaaatcatgacacgatt 24435555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 2171959 - 2172008
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  2171959 aatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 2172008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 6438939 - 6438975
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgatta 47  Q
    |||||||||||| |||||||| |||||||||||||||    
T  6438939 aatcgtgtcacgatttcccaagatcgtgccacgatta 6438975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 11857422 - 11857458
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  11857422 aaatcgtgtcacgatttcccaagatcgtgccacgatt 11857458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 28155214 - 28155166
Alignment:
Q  12 atcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||| |||||||| ||||||||||||||   |||||||||||    
T  28155214 atcgtgtcacgatttcccaagatcgtgccacgattttgcaccctgcaaa 28155166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 17863916 - 17863770
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtca 108  Q
    ||||||||||||||||||||||||||  || ||||||| ||||||||| ||| |||||||||||||| ||||||||||   || |  | |||||||||||    
T  17863916 aaaatcgtgtcacgttttcccaaaattatgtcacgattggacaccctgaaaaccatgctcactgccttgaaaatcgtgcgacgatgccaaaatcgtgtca 17863817  T
Q  109 cgattcttatcattctcaacttcacaaatttgaagacatacacaacaa 156  Q
    ||||||  | |||||||||||||||||| |||||||||||||||||||    
T  17863816 cgattc-caacattctcaacttcacaaagttgaagacatacacaacaa 17863770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 39284629 - 39284516
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgc-aaaacatgctcactgcctagaaaatcgtgacgcgcttactaa 99  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||| ||| ||||||||||||||||||||||||||| || || | ||    
T  39284629 gcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacgataggacaccctgcgaaaccatgctcactgcctagaaaatcgtgacacgtttgccaa 39284530  T
Q  100 atcgtgtcacgatt 113  Q
     |||||||||||||    
T  39284529 ttcgtgtcacgatt 39284516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 45726530 - 45726423
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtca 108  Q
    ||||||||||||| ||| |||||||||||| ||| ||| ||||||||| ||| ||||||||||||||||||||||||||| || || | |||||||||||    
T  45726530 aaaatcgtgtcacatttgcccaaaatcgtgtcacaattggacaccctgaaaatcatgctcactgcctagaaaatcgtgacacggttgccaaatcgtgtca 45726431  T
Q  109 cgattctt 116  Q
    || |||||    
T  45726430 cgtttctt 45726423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36318445 - 36318513
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaa-tcgtgccacgattagacaccctgcaaaacatgctc 68  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||    
T  36318445 gcaagccgaaaatcgtgtcacgtttccccaaaaatcgtgtcacgattggacaccctgcaaaacatgctc 36318513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 33528244 - 33528177
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcct 75  Q
    ||||||||||||||||||||||||||||||| |||||||   ||||||||||| ||||||||||||||    
T  33528244 gaaaatcgtgtcacgttttcccaaaatcgtgacacgattgagcaccctgcaaaccatgctcactgcct 33528177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 2837287 - 2837341
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaac 62  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  2837287 gaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctgcaaaac 2837341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 23078092 - 23077987
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||| ||| |||   |||||| |||  |||||||||||||| | |||||||||| || | |  ||||||||||    
T  23078092 gaaaatcgtgtcacgttttcccaaaatcgtgacacaattgagcaccctacaatccatgctcactgcctgggaaatcgtgacacgttgatgaaatcgtgtc 23077993  T
Q  108 acgatt 113  Q
    ||||||    
T  23077992 acgatt 23077987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29867611 - 29867556
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  29867611 gcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg 29867556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 34389327 - 34389375
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34389327 gaaaatcgtgtcacgttttcccaaaatcgtgtcacgattggacaccctg 34389375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 35447542 - 35447630
Alignment:
Q  6 ccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgctt 94  Q
    |||| ||||||||||| ||||||||||||||||  || |||  |||||||| |||  ||||||||||||||||||||| |||| |||||    
T  35447542 ccgataatcgtgtcacattttcccaaaatcgtgttacaattgaacaccctgaaaacaatgctcactgcctagaaaatcatgacacgctt 35447630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6595431 - 6595486
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  6595431 gcaagccaaaaatcgtgtcacgttttcccaaaattgtgtcacgattggacaccctg 6595486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36988512 - 36988567
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg 56  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  36988512 gcaagtcgaaaatcgtgtcacgttttcccaaaatcatgtcacgattggacaccctg 36988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 8389768 - 8389666
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtc 107  Q
    ||||||||||||||||||||||||||||||| |||||    |||||||||||| ||| |||||||||| | ||||| |||| || | |  ||||||||||    
T  8389768 gaaaatcgtgtcacgttttcccaaaatcgtgacacga--gaacaccctgcaaatcatactcactgcct-ggaaatcttgacacgttgatgaaatcgtgtc 8389672  T
Q  108 acgatt 113  Q
    ||||||    
T  8389671 acgatt 8389666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 10706873 - 10706768
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctg-caaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||||||||||||||||||||| ||| |||   |||||||  ||| ||||||| |||||| |||||||||||| || | |  |||||||||    
T  10706873 gaaaatcgtgtcacgttttcccaaaatcgtgacacaattgagcaccctgagaaaccatgctccctgcct-gaaaatcgtgacacgttgatgaaatcgtgt 10706775  T
Q  107 cacgatt 113  Q
    |||||||    
T  10706774 cacgatt 10706768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 14698630 - 14698556
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaat 82  Q
    |||||||||||||||||||||||||||||||  |||| |  ||| || | ||| |||||||||||||||||||||    
T  14698630 gaaaatcgtgtcacgttttcccaaaatcgtgatacgaatgaacatccagaaaatcatgctcactgcctagaaaat 14698556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 13569807 - 13569879
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaa 80  Q
    ||||||||||||||||||| |||||||  || |||||||   ||||||||||| |||||||||||||| ||||    
T  13569807 gaaaatcgtgtcacgtttttccaaaattatgacacgattgagcaccctgcaaaccatgctcactgcctggaaa 13569879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 28258798 - 28258746
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||| |||||| ||||||||||| |||||||||||||    
T  28258798 gaaaatcgtgtcacgatttcacaaaattgtgccacgatttgacaccctgcaaa 28258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 17865654 - 17865759
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    |||||||||||||| |||||||||||||||| || ||||   ||||||  |||| |||||||||||||| |||||||||||| || | |  ||||| |||    
T  17865654 gaaaatcgtgtcacattttcccaaaatcgtgacatgattgagcaccctaaaaaaccatgctcactgcct-gaaaatcgtgacacgatgatgaaatcatgt 17865752  T
Q  107 cacgatt 113  Q
    |||||||    
T  17865753 cacgatt 17865759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 21630421 - 21630526
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    ||||||||||||| ||||||||||||| ||| |||||||   ||||||  |||| |||||||||||||| | |||||||||| || | |  |||||||||    
T  21630421 gaaaatcgtgtcatgttttcccaaaattgtgacacgattgagcaccctaaaaaaccatgctcactgcct-ggaaatcgtgacacgttgatgaaatcgtgt 21630519  T
Q  107 cacgatt 113  Q
    |||||||    
T  21630520 cacgatt 21630526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 39483353 - 39483391
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  39483353 gaaaatcgtgtcacgttttcccaaaatcgtgacacgatt 39483391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 20522698 - 20522771
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaa 80  Q
    |||||||||||||||||||| |||||||||| |||||||   ||||||| |||| |||||||| ||||| ||||    
T  20522698 gaaaatcgtgtcacgttttctcaaaatcgtgacacgattgagcaccctgaaaaaccatgctcattgcctggaaa 20522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25410118 - 25410170
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  25410118 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 25410170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30833069 - 30833017
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  30833069 gaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 30833017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 6266420 - 6266370
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||| ||||||| ||||||| ||||||| | |||||||||||    
T  6266420 aaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcaaa 6266370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45099486 - 45099432
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccct 55  Q
    ||||||| |||||||||||||  ||||||||||| ||| ||||||| ||||||||    
T  45099486 gcaagccaaaaatcgtgtcacaatttcccaaaattgtgtcacgattggacaccct 45099432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3492232 - 3492281
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||| |||||||| |||||| ||||||| | |||||||||||    
T  3492232 aatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 3492281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 9296006 - 9295957
Alignment:
Q  11 aatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||| |||||||| |||||||||||||| | || ||||||||    
T  9296006 aatcgtgtcacgatttcccaagatcgtgccacgatttggcatcctgcaaa 9295957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 11098532 - 11098496
Alignment:
Q  10 aaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  11098532 aaatcgtgtcacgatttcccaagatcgtgccacgatt 11098496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 20852 - 20963
Alignment:
Q  2 caagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||  | | | ||||||||||| |||||   |||    
T  20852 caagccgaaaatcgtgtcacgttttcccaaaatcgtgtcatgattggacaccctgcaaaacatgctcacgacattgcaaaatcgtgacacgcttcacaaa 20951  T
Q  101 tcgtgtcacgat 112  Q
    ||||||||||||    
T  20952 tcgtgtcacgat 20963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11072 - 10959
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctag-aaaatcgtgacgcgcttactaa 99  Q
    |||| |||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||| || | | ||||||||||| ||| ||  ||    
T  11072 gcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacgattggacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctatgaa 10973  T
Q  100 atcgtgtcacgatt 113  Q
    ||||||||||||||    
T  10972 atcgtgtcacgatt 10959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 80937 - 81050
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaa 100  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| |||  |||||||||||||||||||||||  | || |  | |||    
T  80937 gcaagccgaaaatcgtgccacgttttcccaaaatcgtgtcacgattggataccctgaaaacaatgctcactgcctagaaaatcgtaccacgatgccaaaa 81036  T
Q  101 tcgtgtcacgattc 114  Q
    ||||||||||||||    
T  81037 tcgtgtcacgattc 81050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17700 - 17767
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctc 68  Q
    ||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  17700 gcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacggttggacaccctgcaaaacatgctc 17767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 6833 - 6749
Alignment:
Q  30 aaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtcacgattc 114  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| | || |  | |||||||||||||||||    
T  6833 aaaatcgtgtcacgattggacaccctgcaaaccatgctcactgcctagaaaatcgtgccacgatgccaaaatcgtgtcacgattc 6749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 36453 - 36401
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  36453 gaaaattgtgtcacgttttcacaaaatcgtgccacgatttgacaccctgcaaa 36401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 86066 - 86168
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaacatgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgtca 108  Q
    |||||||||||||||||||||||||||||| || ||||   ||||||||||| ||||||| |||||| | |||||||||| || | |  |||||||||||    
T  86066 aaaatcgtgtcacgttttcccaaaatcgtg-catgattgagcaccctgcaaaccatgctccctgcct-ggaaatcgtgacacgttgatgaaatcgtgtca 86163  T
Q  109 cgatt 113  Q
    |||||    
T  86164 cgatt 86168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 45675 - 45727
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||||||||||| |||| || ||||||||||||||| |||||||||||||    
T  45675 gaaaatcgtgtcacgatttcacagaatcgtgccacgatttgacaccctgcaaa 45727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 1230 - 1179
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||||    
T  1230 aaaatcgtgtcacgatttcacaaaatcgtaccacgatttgacaccctgcaaa 1179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 6162 - 6267
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaaa-catgctcactgcctagaaaatcgtgacgcgcttactaaatcgtgt 106  Q
    |||||||||||||| ||||||||||||| || |||||||  | ||| || |||| ||||||| |||||||| |||||||||| || | |  |||||||||    
T  6162 gaaaatcgtgtcacattttcccaaaatcatgacacgattgaataccttgaaaaaccatgctcgctgcctag-aaatcgtgacacgttgatgaaatcgtgt 6260  T
Q  107 cacgatt 113  Q
    |||||||    
T  6261 cacgatt 6267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 2970 - 3008
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  2970 gaaaatcgggtcacgttttcccaaaatcgtgacacgatt 3008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 149497 - 149542
Alignment:
Q  1 gcaagccgaaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    ||||||||||||||||| ||| |||||||||||||||  |||||||    
T  149497 gcaagccgaaaatcgtgacacattttcccaaaatcgtatcacgatt 149542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 434255 - 434218
Alignment:
Q  9 aaaatcgtgtcacgttttcccaaaatcgtgccacgatt 46  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  434255 aaaatcgtgtcacgatttcccaaaatcgtgtcacgatt 434218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 17579 - 17527
Alignment:
Q  8 gaaaatcgtgtcacgttttcccaaaatcgtgccacgattagacaccctgcaaa 60  Q
    ||||||| ||||||| |||||||| |||||| ||||||| | |||||||||||    
T  17579 gaaaatcatgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaa 17527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University