View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17038_low_5 (Length: 258)
Name: NF17038_low_5
Description: NF17038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17038_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 38564588 - 38564812
Alignment:
| Q |
18 |
atcttaaaattcaatagtggctagctagagtcatatatagcaaaacttaatcttttaaatgattgtgcaaagttttattatcatatgatgaatttgaagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
38564588 |
atcttaaaattcaatagtggctagctagagtcatatatagcaaaacttaatcttttaaatgattgtgcaaggttttattatcatatgatgagtttgaagc |
38564687 |
T |
|
| Q |
118 |
cgcggtgcatgcatattatgcgttctacgcaagtcaatgataggaggcacgtatagggccac-tcaacttagaatatcctacccattacctttgaaaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38564688 |
cgcggtgcatgcatattatgcgttctacgcaagtcaatgataagaggcacgtatagggccacttcaacttagaatatcctacccattacctttgaaaaat |
38564787 |
T |
|
| Q |
217 |
gttaataggaatagaacaccacaca |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
38564788 |
gttaataggaatagaacaccacaca |
38564812 |
T |
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