View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17038_low_6 (Length: 229)
Name: NF17038_low_6
Description: NF17038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17038_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 1558646 - 1558837
Alignment:
| Q |
21 |
aagtttttcacttttcttgcaagcttcataagtgtttttaaagttagtagtttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
120 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
1558646 |
aagtttttcacttttcttgcaagcttcaaaagtgtttttaaagttagcaggttgagatatcatgtctttgtcaggtccaagattctcatcataagtggta |
1558745 |
T |
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| Q |
121 |
atgggagtgataatagtagcatcataagcagctattttagatgaggcagcttgcttgcttaggtttggatccccagcacatatatcctcatt |
212 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
1558746 |
ataggagtgataatagtagcatcataagtagctattttagatgaggcagcttgcttgcttaggtttggatccccaacacagatatcctcatt |
1558837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 48769693 - 48769500
Alignment:
| Q |
21 |
aagtttttcacttttcttgcaagcttcataagtgtttttaaagttagtagtttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
120 |
Q |
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|||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48769693 |
aagtttttcactttccttgcaagcttcagaagtgttttcaaagttagcaggttgagatatcctgcctttgtcaggtcgaagattctcatcataagtggta |
48769594 |
T |
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| Q |
121 |
atgggagtgataatagtagcatcataagcagctattttagatgaggcagcttgcttgcttaggtttggatccccagcacatatatcctcatttg |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
48769593 |
atgggagtgataatagtagcatcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccctacacagatatcctcatttg |
48769500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 43404165 - 43404286
Alignment:
| Q |
21 |
aagtttttcacttttcttgcaagcttcataagtgtttttaaagttagtagtttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
120 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| |||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43404165 |
aagtttttcacttttcttgcaagcttcagaagtatttttagagttggcaggttgagatatcctgcctttgtcaggtccaaaattctcatcataagtggta |
43404264 |
T |
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| Q |
121 |
atgggagtgataatagtagcat |
142 |
Q |
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||||||||||||||||| |||| |
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| T |
43404265 |
atgggagtgataatagtggcat |
43404286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 18979662 - 18979485
Alignment:
| Q |
21 |
aagtttttcacttttcttgcaagcttcataagtgtttttaaagttagtagtttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
120 |
Q |
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|
|||||||||| ||||||||||||||||| |||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18979662 |
aagtttttcatttttcttgcaagcttcagaagtgtttttaaagttggcaggttgagatatcatgcctttgtcaggtccaagattctcatcataagtggta |
18979563 |
T |
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| Q |
121 |
atgggagtgataatagtagcatcataagcagctattttagatgaggcagcttgcttgcttaggtttggatccccagca |
198 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18979562 |
atgggagtgataatagtagcatcataagtatctattttagatgaggcagcttgcttgcttaggtttagatccccagca |
18979485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 26155080 - 26154903
Alignment:
| Q |
21 |
aagtttttcacttttcttgcaagcttcataagtgtttttaaagttagtagtttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
120 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155080 |
aagtttttcacttttcttgcaagcttcagaagtatttttagagttggcaggttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
26154981 |
T |
|
| Q |
121 |
atgggagtgataatagtagcatcataagcagctattttagatgaggcagcttgcttgcttaggtttggatccccagca |
198 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
26154980 |
atgggagtgataatagtagcatcataagtagcgattttagatgaggtagcttgcttgcttagatttggatccccagca |
26154903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 40274939 - 40274765
Alignment:
| Q |
21 |
aagtttttcacttttcttgcaagcttcataagtgtttttaaagttagtagtttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
120 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40274939 |
aagtttttcacttttcttgcaagcttcaaaagtatttttagagttggcaggttgagatatcctgcctttgtcaggtccaagattctcatcataagtggta |
40274840 |
T |
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| Q |
121 |
atgggagtgataatagtagcatcataagcagctattttagatgaggcagcttgcttgcttaggtttggatcccca |
195 |
Q |
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||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40274839 |
atgggagtggtaatagtagcatcctaagtagctattttagatgaggcagcttgcttgcttagaattggatcccca |
40274765 |
T |
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