View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17039_high_1 (Length: 476)
Name: NF17039_high_1
Description: NF17039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17039_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 42056432 - 42055976
Alignment:
| Q |
1 |
agactactaagtaggtcatcatttgtagtgatgcgagtgtcttcacgatttgtaactcttgaccctggtattcaagtttataggttgttgcacagtttgg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42056432 |
agactactaattaggtcatcatttgtagtgatgcgagtgtcttcacgatttgtaactcttgaccctggtattcaagtttataggttgttgcacagtttgg |
42056333 |
T |
|
| Q |
101 |
gatagataagttacaattgttgtaatcatatttgagatagatagttaatacattttattggtgggatttttctttggaagtaggtacttgtgtgttctac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42056332 |
gatagataagttacaattgttgtaatcatatttgagatagatagttaatacattttattggtgggatttttctttggaagtaggtacttgtgtgttctac |
42056233 |
T |
|
| Q |
201 |
cactttctctgtgttgtgctcatgtgtattctatcaaatatccttgaatatgtgggtaaattcgttggcatgtcatgtgcatgcagnnnnnnncaacaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42056232 |
cactttctctgtgttgtgctcatgtgtattctatcaaatatccttgaatatgtgggtaaattcgttggcatgtcatgtgcatgcagtttttttcaacaaa |
42056133 |
T |
|
| Q |
301 |
taatttctcaaattggttaatcgtccacttcaactaaattgtacgaatcaatttgatcatgcattcatgctttacttttatttctcatttgatgacaaaa |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42056132 |
taatttcccaaattggttaatcgtccacttcaactaaattgtccgaatcaatttgatcatgcattcatgctttacttttatttctcatttgatgacaaaa |
42056033 |
T |
|
| Q |
401 |
ttaatcaattgttcaagtagcataagacttgacaaagtagtaatagcaatatcaata |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42056032 |
ttaatcaattgttcaagtagcataagacttgacaaagtagtaatagcaatatcaata |
42055976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University