View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17039_low_3 (Length: 432)
Name: NF17039_low_3
Description: NF17039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17039_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 35 - 425
Target Start/End: Original strand, 5384510 - 5384896
Alignment:
| Q |
35 |
tgtatgcgcattgtgaatgctgctaatagtcatcggtatttcttcaacactcggacttgttcttctagatttagttgaaaaattacataatgcaccaatg |
134 |
Q |
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| T |
5384510 |
tgtatgcgcattgtgaatgct---aatagtcatcggtatttcttcaacactcggacttgttcttctagatt-agttgaaaaattacataatgcaccgatg |
5384605 |
T |
|
| Q |
135 |
attgatgctaacttttcttcagtgtcgtgtaaattgtatttcctctattcccttttaaatgtttcttttagagaaaattttctttcctttttaactgtat |
234 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||| |
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| T |
5384606 |
attgatgctaacttttcttcagtgttgtgtaaattgtatttcctctattcctttttaagtgtttcttttagagaaaattttcgttcctttttaacagtat |
5384705 |
T |
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| Q |
235 |
taactgtgcaagtttttcctnnnnnnnnnnnnctgtaagtttaaaattttaatcatactatggctgagtcaaacttgcggacttcatgagatcactcatt |
334 |
Q |
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|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
5384706 |
taactgcgcaagttttccctaaaaaataaaaactgtaagtttaaaattttaatcatactatggctgagtcaaacttgctgacttcatgagatcacgcatt |
5384805 |
T |
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| Q |
335 |
cctctaattcaagactttggagtcaactgtgatatcatatttcggtcatggcaacgtaggtggacattcttgatcattgacatgatgatgt |
425 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5384806 |
cctctaatttaagactttggagtcaactgtgatatcatatttcggtcatggcaacgtaggtggacattcttgatcattgacatgatgatgt |
5384896 |
T |
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