View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17039_low_6 (Length: 248)
Name: NF17039_low_6
Description: NF17039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17039_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 4648201 - 4648384
Alignment:
| Q |
51 |
agaagtaattcgtgaggaatcaatggagaaatgtgcagttttcagcaaaaaacgaagaagatgaagaaaaggatcttaacttttgtgataaacttccacc |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4648201 |
agaagaaattcgtgaggaatcaatggagaaatgtgaagttttcagcaaaaaacgaagaaggtgaagaaaaggatcttaacttttgtaataaacttccacc |
4648300 |
T |
|
| Q |
151 |
atggaaatgagagaaaaaagctctgataccatgttatgggaagcaaataatgaaatgaa-ctcatttctcatagatgtaaatga |
233 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4648301 |
atggaaatgagagaaaaaagctccgataccatgttatgggaagcaaataatgaaatgaatctcatttctcatagatgtaaatga |
4648384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 24674531 - 24674475
Alignment:
| Q |
141 |
aacttccaccatggaaatgagagaaaaaagctct-gataccatgttatgggaagcaaa |
197 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||||| |||||| ||||||| |
|
|
| T |
24674531 |
aacttccaccatggaaatgaga-agaaaagctctagataccatcttatggaaagcaaa |
24674475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 8847794 - 8847625
Alignment:
| Q |
67 |
gaatcaatggagaaatgtgcagttttcagcaaaaaacgaagaagatgaagaaaaggatcttaact----tttgtgataaacttccaccatggaaatgaga |
162 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||| | |||||||||||| |||| ||||| ||||| | |||||||||| |||||||||||| |
|
|
| T |
8847794 |
gaatcaatggagaaacgcgaagttttcagcaaaaaattat-aagatgaagaaacggattgtaactaacttttgtaacaaacttccacaatggaaatgaga |
8847696 |
T |
|
| Q |
163 |
gaaaaaagctctgataccatgttatgggaagcaaataatgaaatgaa-ctcatttctcatagatgtaaatg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
8847695 |
gaaaaaagctctgataccatgttatgggaagcaaataatgaaaaaaatctcatttctcatagatgtgaatg |
8847625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 34064924 - 34064875
Alignment:
| Q |
141 |
aacttccaccatggaaatgagagaaaaaagct-ctgataccatgttatgg |
189 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
34064924 |
aacttccgccatggaagagagagaaaaaagctcctgataccatgttatgg |
34064875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University