View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_high_17 (Length: 236)
Name: NF1703_high_17
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_high_17 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21155 - 20934
Alignment:
| Q |
1 |
ccaattacctacaaataatactagagagtagagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaattttcttag |
100 |
Q |
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| T |
21155 |
ccaattacctacaaataatactagagagtagagatgaaatcgtatgttgtattcgaaatgaaaattacctcagcatctccttccatcctaactttcttag |
21056 |
T |
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| Q |
101 |
cttgtacgccaagcaaatctatcgtggtaagagataaaaattaatatca-taacatattacaatgattaggaaatcacaaaatgactcaaattatgcatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055 |
cttgtacgccaagcaaatctatcgtggtaagagatagaatttaatatcagtaacatattacaatgattaggaaatcacaaaatgactcaaattatgcatc |
20956 |
T |
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| Q |
200 |
accttggttgactgcaataact |
221 |
Q |
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||||||||| |||||||||||| |
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| T |
20955 |
accttggttaactgcaataact |
20934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27527274 - 27527053
Alignment:
| Q |
1 |
ccaattacctacaaataatactagagagtagagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaattttcttag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
27527274 |
ccaattacctacaaataatactagagagtagagatgaaatcgtatgttgtattcgaaatgaaaattacctcagcatctccttccatcctaactttcttag |
27527175 |
T |
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| Q |
101 |
cttgtacgccaagcaaatctatcgtggtaagagataaaaattaatatca-taacatattacaatgattaggaaatcacaaaatgactcaaattatgcatc |
199 |
Q |
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| T |
27527174 |
cttgtacgccaagcaaatctatcgtggtaagagatagaatttaatatcagtaacatattacaatgattaggaaatcacaaaatgactcaaattatgcatc |
27527075 |
T |
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| Q |
200 |
accttggttgactgcaataact |
221 |
Q |
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||||||||| |||||||||||| |
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| T |
27527074 |
accttggttaactgcaataact |
27527053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 27533017 - 27532823
Alignment:
| Q |
31 |
gagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaattttcttagcttgtacgccaagcaaatctatcgtgg--t |
128 |
Q |
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|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| | |
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| T |
27533017 |
gagaagaaatcgtatgttgtattcggaatgaaaattacctcagcatcaccttccatcctaacctttttagcttgtacgccaagcgaatctatcgtgtgat |
27532918 |
T |
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| Q |
129 |
aagagataaaaattaatatca-taac--atattaca-atgattaggaaatcacaaaatgactcaaattatgcatcaccttggttgactgcaataact |
221 |
Q |
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| T |
27532917 |
aaaagatataacataatatcagtaacgtatattacatatgattagaaaatcgcaaaatgac--aaattatgcatcaccttggttaactgcaataact |
27532823 |
T |
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