View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_high_21 (Length: 219)
Name: NF1703_high_21
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 47129087 - 47129274
Alignment:
| Q |
20 |
atgtggacgactagttcttcctctacgtggataagggaacttttgtgatccaccaataacaggacgtgcataatctggaccattatctggagttcccaag |
119 |
Q |
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| T |
47129087 |
atgtggacgactagttcttcctctacgtggataaggaaacttttgtgatccaccaataacaggacgtgcataatctggaccattatctggagttcccaag |
47129186 |
T |
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| Q |
120 |
tcattgtagcatgcatagtcatacactctatcccactcattaagtttcccaatccctttaccacggagggtaccaagttcttcttctc |
207 |
Q |
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| T |
47129187 |
tcattgtagcatgcatagtcatacactctatcccactcattaagtttcccaatccctttaccacggagggtaccaagttcttcttctc |
47129274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 36923609 - 36923550
Alignment:
| Q |
97 |
gaccattatctggagttcccaagtcattgtagcatgcatagtcatacactctatcccact |
156 |
Q |
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| T |
36923609 |
gacctttatcaggatttcccaaatcattgtagcatgcataatcataaaccctatcccact |
36923550 |
T |
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