View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_low_1 (Length: 434)
Name: NF1703_low_1
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_1 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 33633683 - 33633250
Alignment:
| Q |
1 |
tgcgtgcttaatttgttaattgatatatccaaagtgattttcaccgattaaataatcagattagttcgtaannnnnnnnncaatttttaatatgtatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33633683 |
tgcgtgcttaatttgttaattgatatatccaaagtgattttcaccgattaaataatcagattagttcgtaatttttttttcaatttttaatatgtatttt |
33633584 |
T |
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| Q |
101 |
taacataaattagttctggatgtacatttcatattttgatgtgatgtgcggtttgagtcaagctgcaaattttgttattatgttaaaatatgaataaaac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633583 |
taacataaattagttctgggtgtacatttcatattttgatgtaatgtgcggtttgagtcaagctgcaaattttgttattatgttaaaatatgaataaaac |
33633484 |
T |
|
| Q |
201 |
agtcaatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33633483 |
agtcaatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgaaacaatcgggattgtggactgcaattttgaactaaaatgt |
33633384 |
T |
|
| Q |
301 |
gaggactgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactatatttactatattttaacgtgacttaaga |
400 |
Q |
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| T |
33633383 |
gaggactgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaccaacttaactatatttactatattttaacgtgacttaaga |
33633284 |
T |
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| Q |
401 |
agttagtccattgaattcgttcgttagagtactt |
434 |
Q |
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| T |
33633283 |
agttagtccattgaattcgttcgttagagtactt |
33633250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 205 - 434
Target Start/End: Original strand, 29192467 - 29192692
Alignment:
| Q |
205 |
aatttggccgcaattacaattacgttaccattgcgatactgctaaaacctagttgcaacaatcgggattgtggactgcaattttgaactaaaatgtgagg |
304 |
Q |
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|||||||||| |||| ||||||| ||||| ||| | ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |
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| T |
29192467 |
aatttggccgtaattgcaattacattaccgttgagggacttctaaaacctagttgcaacaattgggattgtagactgcaattttgaactaaaatgttagg |
29192566 |
T |
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| Q |
305 |
actgatttaactgaagaagttctattgtgttggagcaactcatatttttgaatgaacaacttaactatatttactatattttaacgtgacttaagaagtt |
404 |
Q |
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|||||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||| | ||||| |
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| T |
29192567 |
actgatttaactgaaggagttctattgcgttcgagcaactcatatttttgaaggatcaact----tatatttactagattttaatgtgacttgaaaagtt |
29192662 |
T |
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| Q |
405 |
agtccattgaattcgttcgttagagtactt |
434 |
Q |
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| T |
29192663 |
agtccattgaattcgttcttttgagtactt |
29192692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 29192383 - 29192441
Alignment:
| Q |
13 |
ttgttaattgatatatccaaagtgattttcaccgattaaataatcagattagttcgtaa |
71 |
Q |
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| T |
29192383 |
ttgttaattgatatattcaaagtgatttacaccgattaaataatcagattagttcgtaa |
29192441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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