View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1703_low_10 (Length: 250)
Name: NF1703_low_10
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 28841465 - 28841702
Alignment:
| Q |
13 |
aatatatgccaaaatccaaaacaaacctcatatcagaagtaaaagaatctcaaaggcacttatataaccttaagaacaagctgttcctagtatgctcatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28841465 |
aatatatgccaaaatccaaaacaaacctcatatcagaagtaaaagaatctcaaaggcacttatataaccttaagaacaagctgttcctagtatgctcatg |
28841564 |
T |
|
| Q |
113 |
acatagtctgtttctgcatgtttcactgagtgagaaaaagaaagaggggaacatggcgtggttcttttccaagaagaggaatgcaggatggaagcatgga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28841565 |
acatagtctgtttctgcatgtttcactgagtgagaaaaagaaagaggggaacatggcgtggttcttttccaagaagaggaatgcaggatggaagcatgga |
28841664 |
T |
|
| Q |
213 |
tacgcggagcagaacatggaaactgtttctccttctcc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28841665 |
tacgcggagcagaacatggaaactgtttctccttctcc |
28841702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University