View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_low_11 (Length: 247)
Name: NF1703_low_11
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 21055031 - 21054793
Alignment:
| Q |
1 |
aggagcaaagaccctcaatgagcgaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggcttgcctcaagatactt |
100 |
Q |
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| T |
21055031 |
aggagcaaagaccctcaatgagcaaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggcttgcctcaagatactt |
21054932 |
T |
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| Q |
101 |
tctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaagctctcgagcactgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21054931 |
tctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcagccatgcaatttacctttttcgacatcttgttcaagctctcgagcactgat |
21054832 |
T |
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| Q |
201 |
gttgaatttcctacaccacccaggtttttcaagagaata |
239 |
Q |
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| T |
21054831 |
gttgaatttcctacaccacccaggtttttcaagagaata |
21054793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26366890 - 26367128
Alignment:
| Q |
1 |
aggagcaaagaccctcaatgagcgaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggcttgcctcaagatactt |
100 |
Q |
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|||| |||||||||||||||||| |||||||| | || ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
26366890 |
aggaacaaagaccctcaatgagcaaattgtaactgtttgcagaaggccaatatgatttaattgacatttgttccaaaagttggcttgcctgaagatactt |
26366989 |
T |
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| Q |
101 |
tctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaagctctcgagcactgat |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
26366990 |
tccctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaagctttcgagcaccgac |
26367089 |
T |
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| Q |
201 |
gttgaatttcctacaccacccaggtttttcaagagaata |
239 |
Q |
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|| ||||||||||||| || | |||||||||||||||| |
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| T |
26367090 |
gtcgaatttcctacactacgtatgtttttcaagagaata |
26367128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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